David R. Penas
Orcid: 0000-0002-7256-3094
According to our database1,
David R. Penas
authored at least 18 papers
between 2012 and 2024.
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Bibliography
2024
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells.
PLoS Comput. Biol., January, 2024
Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers.
PLoS Comput. Biol., 2024
2023
Computational advances in polynomial optimization: RAPOSa, a freely available global solver.
J. Glob. Optim., March, 2023
Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants.
PLoS Comput. Biol., 2023
A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers.
Int. Trans. Oper. Res., 2023
2020
RAIRO Oper. Res., 2020
2019
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology.
J. Supercomput., 2019
Enhanced global optimization methods applied to complex fisheries stock assessment models.
Appl. Soft Comput., 2019
2018
Concurr. Comput. Pract. Exp., 2018
Proceedings of the 6th International Workshop on Parallelism in Bioinformatics, 2018
2017
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology.
Clust. Comput., 2017
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy.
BMC Bioinform., 2017
Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study.
Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017
2016
Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark.
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016
2015
Enhanced parallel Differential Evolution algorithm for problems in computational systems biology.
Appl. Soft Comput., 2015
Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method.
Proceedings of the International Conference on Computational Science, 2015
2014
A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014
2012
A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships.
Proceedings of the Process Support and Knowledge Representation in Health Care, 2012