David Perahia
Orcid: 0000-0001-7480-3349
According to our database1,
David Perahia
authored at least 7 papers
between 2011 and 2024.
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Bibliography
2024
MDFF_NM: Improved Molecular Dynamics Flexible Fitting into Cryo-EM Density Maps with a Multireplica Normal Mode-Based Search.
J. Chem. Inf. Model., 2024
2021
Multimolecular complexes of the phosphodiester anion with Zn(II) or Mg(II) and water molecules - Preliminary validations of a polarizable potential by ab initio quantum chemistry.
J. Comput. Chem., 2021
2020
A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit).
J. Chem. Inf. Model., 2020
2016
Complexes of a Zn-metalloenzyme binding site with hydroxamate-containing ligands. A case for detailed benchmarkings of polarizable molecular mechanics/dynamics potentials when the experimental binding structure is unknown.
J. Comput. Chem., 2016
2014
Polarizable molecular mechanics studies of Cu(I)/Zn(II) superoxide dismutase: Bimetallic binding site and structured waters.
J. Comput. Chem., 2014
2012
Appl. Math. Comput., 2012
2011
Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms.
PLoS Comput. Biol., 2011