David M. Umulis

According to our database, David M. Umulis authored at least 14 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

3D nuclei segmentation for multi-cellular quantification of zebrafish embryos using NISNet3D.

Linlin Li, Liming Wu, Alain Chen, Edward J. Delp, David M. Umulis

Proceedings of the 3D Imaging and Applications 2021, 2023

2022

PDE-constrained shape registration to characterize biological growth and morphogenesis from imaging data.

Aishwarya Pawar, Linlin Li, Arun Gosain, David M. Umulis, Adrian Buganza Tepole

Eng. Comput., 2022

2021

Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling.

Md. Shahriar Karim, Aasakiran Madamanchi, James A. Dutko, Mary C. Mullins, David M. Umulis

PLoS Comput. Biol., 2021

2019

An Investigation of Undergraduates' Computational Thinking in a Sophomore-Level Biomedical Engineering Course.

Huma Shoaib, Monica Cardella, Aasakiran Madamanchi, David M. Umulis

Proceedings of the IEEE Frontiers in Education Conference, 2019

Computation, Gender, and Engineering Identity Among Biomedical Engineering Undergraduates.

Huma Shoaib, Monica E. Cardella, Aasakiran Madamanchi, David M. Umulis

Proceedings of the IEEE Frontiers in Education Conference, 2019

Ground Truth Annotator and 3D Dataset Generator for Validation of Nuclei Segmentation Programs.

Tzu-Ching Wu, Xu Wang, David M. Umulis

Proceedings of the 12th International Congress on Image and Signal Processing, 2019

2018

Leveraging Compute Clusters for Large-Scale Parametric Screens of Reaction-Diffusion Systems.

Md. Shahriar Karim, Hans G. Othmer, David M. Umulis

Proceedings of the 26th Euromicro International Conference on Parallel, 2018

Qualitative Findings from Study of Interdisciplinary Education in Computational Modeling for Life Sciences Student Researchers from Emerging Research Institutions.

Aasakiran Madamanchi, Shenika V. Poindexter, Monica E. Cardella, James A. Glazier, David M. Umulis

Proceedings of the IEEE Frontiers in Education Conference, 2018

Factors Mediating Learning and Application of Computational Modeling by Life Scientists.

Aasakiran Madamanchi, Monica E. Cardella, James A. Glazier, David M. Umulis

Proceedings of the IEEE Frontiers in Education Conference, 2018

2017

An Integrative multi-lineage model of variation in leukopoiesis and acute myelogenous leukemia.

Joyatee M. Sarker, Serena M. Pearce, Robert P. Nelson Jr., Tamara Kinzer-Ursem, David M. Umulis, Ann E. Rundell

BMC Syst. Biol., 2017

2016

A point matching algorithm for point set registration.

Yan Huang, David M. Umulis

Proceedings of the 9th International Congress on Image and Signal Processing, 2016

2014

Model-Based Analysis for Qualitative Data: An Application in <i>Drosophila</i> Germline Stem Cell Regulation.

Michael Pargett, Ann E. Rundell, Gregery T. Buzzard, David M. Umulis

PLoS Comput. Biol., 2014

2012

Scale invariance of morphogen-mediated patterning by flux optimization.

David M. Umulis, Hans G. Othmer

Proceedings of the 5th International Conference on BioMedical Engineering and Informatics, 2012

2011

Steady state probability approximation applied to stochastic model of biological network.

Md. Shahriar Karim, David M. Umulis, Gregery T. Buzzard

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011