David M. Reif

According to our database, David M. Reif authored at least 17 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Deep autoencoder-based behavioral pattern recognition outperforms standard statistical methods in high-dimensional zebrafish studies.

Adrian J. Green, Lisa Truong, Preethi Thunga, Connor Leong, Melody Hancock, Robyn L. Tanguay, David M. Reif

PLoS Comput. Biol., 2024

2021

Leveraging high-throughput screening data, deep neural networks, and conditional generative adversarial networks to advance predictive toxicology.

Adrian J. Green, Martin J. Mohlenkamp, Jhuma Das, Meenal Chaudhari, Lisa Truong, Robyn L. Tanguay, David M. Reif

PLoS Comput. Biol., 2021

2018

ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models.

Skylar W. Marvel, Kimberly To, Fabian A. Grimm, Fred A. Wright, Ivan Rusyn, David M. Reif

BMC Bioinform., 2018

Characterizing the effects of missing data and evaluating imputation methods for chemical prioritization applications using ToxPi.

Kimberly To, Rebecca C. Fry, David M. Reif

BioData Min., 2018

2013

A Computational Model Predicting Disruption of Blood Vessel Development.

Nicole C. Kleinstreuer, David Dix, Michael Rountree, Nancy Baker, Nisha Sipes, David M. Reif, Richard Spencer, Thomas Knudsen

PLoS Comput. Biol., 2013

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.

ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward E. Hudgens, Jane E. Gallagher, Stephen W. Edwards

BMC Syst. Biol., 2013

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.

David M. Reif, Myroslav Sypa, Eric F. Lock, Fred A. Wright, Ander Wilson, Tommy Cathey, Richard S. Judson, Ivan Rusyn

Bioinform., 2013

2012

A comparison of GE optimized neural networks and decision trees.

Kristopher Hoover, Rachel Marceau, Tyndall Harris, David M. Reif, Alison A. Motsinger-Reif

Proceedings of the Genetic and Evolutionary Computation Conference, 2012

2011

Optimization of grammatical evolution decision trees.

Kristopher Hoover, Rachel Marceau, Tyndall Harris, Nicholas E. Hardison, David M. Reif, Alison A. Motsinger-Reif

Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

2008

A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance.

Nicholas E. Hardison, Theresa J. Fanelli, Scott M. Dudek, David M. Reif, Marylyn D. Ritchie, Alison A. Motsinger-Reif

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

2007

Evaporative cooling feature selection for genotypic data involving interactions.

Brett A. McKinney, David M. Reif, Bill C. White, James E. Crowe Jr., Jason H. Moore

Bioinform., 2007

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks.

Alison A. Motsinger, David M. Reif, Theresa J. Fanelli, Anna C. Davis, Marylyn D. Ritchie

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006

Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types.

David M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology.

Alison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie

Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005

Exploratory Visual Analysis of Pharmacogenomic Results.

David M. Reif, Scott M. Dudek, Christian M. Shaffer, Janey Wang, Jason H. Moore

Proceedings of the Biocomputing 2005, 2005

A statistical comparison of grammatical evolution strategies in the domain of human genetics.

Bill C. White, David M. Reif, Joshua C. Gilbert, Jason H. Moore

Proceedings of the IEEE Congress on Evolutionary Computation, 2005

2003

Complex Function Sets Improve Symbolic Discriminant Analysis of Microarray Data.

David M. Reif, Bill C. White, Nancy Olsen, Thomas M. Aune, Jason H. Moore

Proceedings of the Genetic and Evolutionary Computation, 2003