David M. Holloway

According to our database, David M. Holloway authored at least 19 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Body plan evolvability: The role of variability in gene regulatory networks.

Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway

J. Bioinform. Comput. Biol., June, 2024

2018

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data.

Theodore Alexandrov, Nina Golyandina, David M. Holloway, Alexander Shlemov, Alexander V. Spirov

J. Comput. Biol., 2018

2016

Sequential construction of a model for modular gene expression control, applied to spatial patterning of the <i>Drosophila</i> gene <i>hunchback</i>.

Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway

J. Bioinform. Comput. Biol., 2016

2015

Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem.

Leonid Zamdborg, David M. Holloway, Juan Julián Merelo Guervós, Vladimir F. Levchenko, Alexander V. Spirov

Inf. Sci., 2015

2014

Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites.

Alexander V. Spirov, Elizaveta A. Zagriychuk, David M. Holloway

Parallel Process. Lett., 2014

<i>In silico</i> evolution of the <i>hunchback</i> gene indicates redundancy in cis-regulatory organization and spatial gene expression.

Elizaveta A. Zagrijchuk, Marat A. Sabirov, David M. Holloway, Alexander V. Spirov

J. Bioinform. Comput. Biol., 2014

2013

Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation.

Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway

Proceedings of the Pattern Recognition in Bioinformatics, 2013

Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development.

Alexander V. Spirov, David M. Holloway

Proceedings of the International Conference on Computational Science, 2013

2012

Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability.

Nina Golyandina, David M. Holloway, Francisco J. P. Lopes, Alexander V. Spirov, Ekaterina N. Spirova, Konstantin Usevich

Proceedings of the International Conference on Computational Science, 2012

Dynamic regulation of growing domains for elongating and branching morphogenesis in plants.

Lionel G. Harrison, Richard J. Adams, David M. Holloway

Biosyst., 2012

Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites.

David M. Holloway, Alexander B. Kazansky, Alexander V. Spirov

Proceedings of the IJCCI 2012 - Proceedings of the 4th International Joint Conference on Computational Intelligence, Barcelona, Spain, 5, 2012

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise.

Alexander V. Spirov, Nina Golyandina, David M. Holloway, Theodore Alexandrov, Ekaterina N. Spirova, Francisco J. P. Lopes

Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012

Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback.

Alexander V. Spirov, David M. Holloway

Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

2011

Gene Expression Noise in Spatial Patterning: <i>hunchback</i> Promoter Structure Affects Noise Amplitude and Distribution in <i>Drosophila</i> Segmentation.

David M. Holloway, Francisco J. P. Lopes, Luciano da Fontoura Costa, Bruno Augusto Nassif Travençolo, Nina Golyandina, Konstantin Usevich, Alexander V. Spirov

PLoS Comput. Biol., 2011

Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions.

Alexander V. Spirov, David M. Holloway

Proceedings of the ECTA and FCTA 2011, 2011

2010

Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations.

Alexander V. Spirov, David M. Holloway

Proceedings of the International Conference on Computational Science, 2010

2008

Spatial Bistability Generates <i>hunchback</i> Expression Sharpness in the <i>Drosophila</i> Embryo.

Francisco J. P. Lopes, Fernando M. C. Vieira, David M. Holloway, Paulo Mascarello Bisch, Alexander V. Spirov

PLoS Comput. Biol., 2008

2003

Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation.

Alexander V. Spirov, David M. Holloway

Silico Biol., 2003

Evolutionary Techniques for Image Processing a Large Dataset of Early <i>Drosophila</i> Gene Expression.

Alexander V. Spirov, David M. Holloway

EURASIP J. Adv. Signal Process., 2003