David L. Robertson

According to our database, David L. Robertson authored at least 31 papers between 2000 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

HIHISIV: a database of gene expression in HIV and SIV host immune response.

Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto

BMC Bioinform., December, 2024

Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.

Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J. Orton, My V. T. Phan, Matthew Cotten, Ke Yuan, David L. Robertson

PLoS Comput. Biol., January, 2024

Prediction of virus-host associations using protein language models and multiple instance learning.

Dan Liu, Francesca Young, Kieran D. Lamb, David L. Robertson, Ke Yuan

PLoS Comput. Biol., 2024

2022

In silico prediction of HIV-1-host molecular interactions and their directionality.

Haiting Chai, Quan Gu, Joseph Hughes, David L. Robertson

PLoS Comput. Biol., 2022

2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz

Briefings Bioinform., 2021

2020

Predicting host taxonomic information from viral genomes: A comparison of feature representations.

Francesca Young, Simon Rogers, David L. Robertson

PLoS Comput. Biol., 2020

2018

Using set theory to reduce redundancy in pathway sets.

Ruth Alexandra Stoney, Jean-Marc Schwartz, David L. Robertson, Goran Nenadic

BMC Bioinform., 2018

2017

Kindel: indel-aware consensus for nucleotide sequence alignments.

Bede Constantinides, David L. Robertson

J. Open Source Softw., 2017

T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes.

Michail Tsimpidis, Georgios Bachoumis, Kalliopi Mimouli, Zaharoula Kyriakopoulou, David L. Robertson, Panayotis Markoulatos, Grigoris D. Amoutzias

BMC Bioinform., 2017

De novo assembly of nucleotide sequences in a compressed feature space.

Avraam Tapinos, David L. Robertson

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

Marginalised stack denoising autoencoders for metagenomic data binning.

Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

2016

Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data.

Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson

Proceedings of the 2016 IEEE Symposium Series on Computational Intelligence, 2016

2015

Ambiguity and variability of database and software names in bioinformatics.

Geraint Duck, Aleksandar Kovacevic, David L. Robertson, Robert Stevens, Goran Nenadic

J. Biomed. Semant., 2015

A logical model of HIV-1 interactions with the T-cell activation signalling pathway.

Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz

Bioinform., 2015

2014

Extracting patterns of database and software usage from the bioinformatics literature.

Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens

Bioinform., 2014

2013

bioNerDS: exploring bioinformatics' database and software use through literature mining.

Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens

BMC Bioinform., 2013

Cataloging the biomedical world of pain through semi-automated curation of molecular interactions.

Daniel G. Jamieson, Phoebe M. Roberts, David L. Robertson, Ben Sidders, Goran Nenadic

Database J. Biol. Databases Curation, 2013

2012

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

John P. Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson

BMC Bioinform., 2012

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.

Daniel G. Jamieson, Martin Gerner, Farzaneh Sarafraz, Goran Nenadic, David L. Robertson

Database J. Biol. Databases Curation, 2012

2010

Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems.

Jamie I. MacPherson, Jonathan E. Dickerson, John W. Pinney, David L. Robertson

PLoS Comput. Biol., 2010

The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach.

John P. Archer, Andrew Rambaut, Bruce E. Taillon, P. Richard Harrigan, Marilyn Lewis, David L. Robertson

PLoS Comput. Biol., 2010

The biological context of HIV-1 host interactions reveals subtle insights into a system hijack.

Jonathan E. Dickerson, John W. Pinney, David L. Robertson

BMC Syst. Biol., 2010

2009

JNets: Exploring networks by integrating annotation.

Jamie I. MacPherson, John W. Pinney, David L. Robertson

BMC Bioinform., 2009

2008

Identifying the Important HIV-1 Recombination Breakpoints.

John P. Archer, John W. Pinney, Jun Fan, Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, David L. Robertson

PLoS Comput. Biol., 2008

Methodology capture: discriminating between the "best" and the rest of community practice.

James M. Eales, John W. Pinney, Robert D. Stevens, David L. Robertson

BMC Bioinform., 2008

2007

SHARKview: a tool for the visualization of systems biology data.

John W. Pinney, John M. Starkovich, Peter Li, David L. Robertson

BMC Syst. Biol., 2007

Similarity in expression accounts for correlated evolution of interacting proteins.

Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson

BMC Syst. Biol., 2007

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.

Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver

BMC Syst. Biol., 2007

An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network.

Brian J. Holden, John W. Pinney, Simon C. Lovell, Grigoris D. Amoutzias, David L. Robertson

BMC Bioinform., 2007

<i>CTree</i>: comparison of clusters between phylogenetic trees made easy.

John P. Archer, David L. Robertson

Bioinform., 2007

2000

The Detection of Putative Recombinant Sequences Using BLAST.

Alia BenKahla, David L. Robertson, Emmanuel Beaudoing, Jean-Michel Claverie

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000