David J. States

According to our database, David J. States authored at least 42 papers between 1992 and 2014.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2014

CLO: The cell line ontology.

Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He

J. Biomed. Semant., 2014

2012

Metab2MeSH: annotating compounds with medical subject headings.

Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky

Bioinform., 2012

2010

Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives.

Arvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel

J. Bioinform. Comput. Biol., 2010

GLay: community structure analysis of biological networks.

Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng

Bioinform., 2010

2009

Michigan molecular interactions r2: from interacting proteins to pathways.

V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish

Nucleic Acids Res., 2009

MiSearch adaptive pubMed search tool.

David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey

Bioinform., 2009

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman

Bioinform., 2009

Integrating and annotating the interactome using the MiMI plugin for cytoscape.

Jing Gao, Alexander S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States

Bioinform., 2009

2008

Using Directed Information to Build Biologically Relevant Influence Networks.

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel

J. Bioinform. Comput. Biol., 2008

Blind men and elephants: What do citation summaries tell us about a research article?

Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev

J. Assoc. Inf. Sci. Technol., 2008

A bioinformatics analysis of the cell line nomenclature.

Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States

Bioinform., 2008

Cytoscape ESP: simple search of complex biological networks.

Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States

Bioinform., 2008

2007

Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-<i>MYC</i> Recognition Site Binding and Function.

Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States

PLoS Comput. Biol., 2007

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.

Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip C. Andrews, Brian D. Athey, David J. States, H. V. Jagadish

Nucleic Acids Res., 2007

Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information.

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel

EURASIP J. Bioinform. Syst. Biol., 2007

Inferring Time-Varying Network Topologies from Gene Expression Data.

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel

EURASIP J. Bioinform. Syst. Biol., 2007

SAGA: a subgraph matching tool for biological graphs.

Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel

Bioinform., 2007

2006

Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion.

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel

Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

Probabilistic data integration and visualization for understanding transcriptional regulation.

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel

Proceedings of the 14th European Signal Processing Conference, 2006

2005

Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.

Carlos Santos, Daniela Eggle, David J. States

Bioinform., 2005

ISMB 2005 Organization.

H. V. Jagadish, David J. States, Burkhard Rost

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

ISMB 2005.

H. V. Jagadish, David J. States, Burkhard Rost

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2001

Time to defend what we have won

David J. States

Bioinform., 2001

Conformational model for binding site recognition by the E.coli MetJ transcription factor.

Rongxiang Liu, Thomas W. Blackwell, David J. States

Bioinform., 2001

Probabilistic approaches to the use of higher order clone relationships in physical map assembly.

David J. States, Volker Nowotny, Thomas W. Blackwell

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences.

Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999

Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions.

Thomas W. Blackwell, Eric C. Rouchka, David J. States

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Filter matrix estimation in automated DNA sequencing.

Weian Huang, Daniel R. Fuhrmann, David G. Politte, Lewis J. Thomas Jr., David J. States

IEEE Trans. Biomed. Eng., 1998

Comparative accuracy of methods for protein sequence similarity search.

Pankaj Agarwal, David J. States

Bioinform., 1998

Estimation of allele frequencies from color-multiplexed electropherograms.

David G. Politte, David R. Maffitt, David J. States

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

A structure based similarity measure for nucleic acid sequence comparison.

Rongxiang Liu, Thomas W. Blackwell, David J. States

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis.

Eric C. Rouchka, David J. States

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

1996

A Bayesian Evolutionary Distance for Parametrically Aligned Sequences.

Pankaj Agarwal, David J. States

J. Comput. Biol., 1996

Compact Encoding Strategies for DNA Sequence Similarity Search.

David J. States, Pankaj Agarwal

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1994

QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification.

David J. States, Warren Gish

J. Comput. Biol., 1994

The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome.

Pankaj Agarwal, David J. States

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

Motifs in Biology: Analysis of Ambiguous Data: Introduction.

Toni Kazic, David J. States, Lloyd Allison

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1993

Information Enhancement Methods for Large Scale Sequence Analysis.

Jean-Michel Claverie, David J. States

Comput. Chem., 1993

Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification.

David J. States, Nomi L. Harris, Lawrence Hunter

Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

1992

Bayesian Classification of Protein Structure.

Lawrence Hunter, David J. States

IEEE Expert, 1992

Efficient Classification of Massive, Unsegmented Datastreams.

Lawrence Hunter, Nomi L. Harris, David J. States

Proceedings of the Ninth International Workshop on Machine Learning (ML 1992), 1992

Mega-Classification: Discovering Motifs in Massive Datastreams.

Nomi L. Harris, Lawrence Hunter, David J. States

Proceedings of the 10th National Conference on Artificial Intelligence, 1992