David J. Adams

According to our database, David J. Adams authored at least 12 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Towards a clinically-based common coordinate framework for the human gut cell atlas: the gut models.

Albert Burger, Richard A. Baldock, David J. Adams, Shahida Din, Irene Papatheodorou, Michael Glinka, Bill Hill, Derek Houghton, Mehran Sharghi, Michael N. Wicks, Mark J. Arends

BMC Medical Informatics Decis. Mak., December, 2023

2022

Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments.

Luca Barbon, Victoria Offord, Elizabeth J. Radford, Adam P. Butler, Sebastian S. Gerety, David J. Adams, Hong Kee Tan, Andrew J. Waters

Bioinform., 2022

2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

2019

VCF/Plotein: visualization and prioritization of genomic variants from human exome sequencing projects.

Raul Ossio, O. Isaac Garcia-Salinas, Diego Said Anaya-Mancilla, Jair S. García-Sotelo, Luis A. Aguilar, David J. Adams, Carla Daniela Robles-Espinoza

Bioinform., 2019

2017

Genome-wide <i>in vivo</i> screen identifies novel host regulators of metastatic colonization.

Louise van der Weyden, Mark J. Arends, Andrew D. Campbell, Tobias Bald, Hannah Wardle-Jones, Nicola Griggs, Martin Del Castillo Velasco-Herrera, Thomas Tüting, Owen J. Sansom, Natasha A. Karp, Simon Clare, Diane Gleeson, Edward Ryder, Antonella Galli, Elizabeth Tuck, Emma L. Cambridge, Thierry Voet, Iain C. Macaulay, Kim Wong, Sarah Spiegel, Anneliese O. Speak, David J. Adams

Nat., 2017

2014

A comprehensive engineering college-wide program for developing technical communication skills in students.

Ronald S. Harichandran, Jean Nocito-Gobel, Eric Brisart, Nadiye O. Erdil, Michael A. Collura, Samuel B. Daniels, W. David Harding, David J. Adams

Proceedings of the IEEE Frontiers in Education Conference, 2014

2013

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.

Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G. Rust, David J. Adams

Bioinform., 2013

RetroSeq: transposable element discovery from next-generation sequencing data.

Thomas M. Keane, Kim Wong, David J. Adams

Bioinform., 2013

Mutational Genomics for Cancer Pathway Discovery.

Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders

Proceedings of the Pattern Recognition in Bioinformatics, 2013

2010

Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach.

Christiaan Klijn, Jan Bot, David J. Adams, Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jos Jonkers

PLoS Comput. Biol., 2010

Copy number variant detection in inbred strains from short read sequence data.

Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin

Bioinform., 2010

2008

<i>iMapper</i>: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes.

Jun Kong, Fei Zhu, Jim Stalker, David J. Adams

Bioinform., 2008