David Gomez-Cabrero

According to our database, David Gomez-Cabrero authored at least 18 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers.

Sumeer Ahmad Khan, Alberto Maillo, Vincenzo Lagani, Robert Lehmann, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér

Nat. Mac. Intell., December, 2023

LIBRA: an adaptative integrative tool for paired single-cell multi-omics data.

Xabier Martinez-de-morentin, Sumeer Ahmad Khan, Robert Lehmann, Sally Sisi Qu, Alberto Maillo, Narsis A. Kiani, Felipe Prósper, Jesper Tegnér, David Gomez-Cabrero

Quant. Biol., September, 2023

A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model.

Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér

Proceedings of the 24th Annual Conference of the International Speech Communication Association, 2023

Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition.

Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér

Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, 2023

2020

GeneSetCluster: a tool for summarizing and integrating gene-set analysis results.

Ewoud Ewing, Nuria Planell-Picola, Maja Jagodic, David Gomez-Cabrero

BMC Bioinform., 2020

2019

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi

PLoS Comput. Biol., 2019

2018

Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning.

Rise Ooi, Chao-Han Huck Yang, Pin-Yu Chen, Víctor M. Eguíluz, Narsis Aftab Kiani, Hector Zenil, David Gomez-Cabrero, Jesper Tegnér

CoRR, 2018

2017

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies.

Maria Needhamsen, Ewoud Ewing, Harald Lund, David Gomez-Cabrero, Robert Adam Harris, Lara Kular, Maja Jagodic

BMC Bioinform., 2017

2016

ChainRank, a chain prioritisation method for contextualisation of biological networks.

Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier

BMC Bioinform., 2016

A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.

Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos

BMC Bioinform., 2016

Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.

Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos

BMC Bioinform., 2016

From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration.

David Gomez-Cabrero, Jörg Menche, Claudia Vargas, Isaac Cano, Dieter Maier, Albert-László Barabási, Jesper Tegnér, Josep Roca

BMC Bioinform., 2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016

2015

Assessing the consistency of public human tissue RNA-seq data sets.

Frida Danielsson, Tojo James, David Gomez-Cabrero, Mikael Huss

Briefings Bioinform., 2015

2014

STATegra EMS: an Experiment Management System for complex next-generation omics experiments.

Rafael Hernández-de-Diego, Noemi Boix-Chova, David Gomez-Cabrero, Jesper Tegnér, Imad Abugessaisa, Ana Conesa

BMC Syst. Biol., 2014

Data integration in the era of omics: current and future challenges.

David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér

BMC Syst. Biol., 2014

2013

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.

Andrew E. Teschendorff, Francesco Marabita, Matthias Lechner, Thomas E. Bartlett, Jesper Tegnér, David Gomez-Cabrero, Stephan Beck

Bioinform., 2013

2011

ParkDB: a Parkinson's disease gene expression database.

Cristian Taccioli, Vincenza Maselli, Jesper Tegnér, David Gomez-Cabrero, Gioia Altobelli, Warren Emmett, Francesco Lescai, Stefano Gustincich, Elia Stupka

Database J. Biol. Databases Curation, 2011