David Carrell

According to our database, David Carrell authored at least 42 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Data-driven automated classification algorithms for acute health conditions: applying PheNorm to COVID-19 disease.

Joshua C. Smith, Brian D. Williamson, David J. Cronkite, Daniel Park, Jill M. Whitaker, Michael F. McLemore, Joshua Osmanski, Robert Winter, Arvind Ramaprasan, Ann Kelley, Mary Shea, Saranrat Wittayanukorn, Danijela Stojanovic, Yueqin Zhao, Sengwee Toh, Kevin B. Johnson, David Aronoff, David S. Carrell

J. Am. Medical Informatics Assoc., February, 2024

A general framework for developing computable clinical phenotype algorithms.

David S. Carrell, James S. Floyd, Susan Gruber, Brian L. Hazlehurst, Patrick J. Heagerty, Jennifer C. Nelson, Brian D. Williamson, Robert Ball

J. Am. Medical Informatics Assoc., 2024

2023

Characterizing variability of electronic health record-driven phenotype definitions.

Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen

J. Am. Medical Informatics Assoc., February, 2023

2022

Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions.

Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen

BMC Medical Informatics Decis. Mak., 2022

Development of a machine learning model to predict mild cognitive impairment using natural language processing in the absence of screening.

Robert B. Penfold, David S. Carrell, David J. Cronkite, Chester Pabiniak, Tammy Dodd, Ashley M. H. Glass, Eric Johnson, Ella Thompson, H. Michael Arrighi, Paul E. Stang

BMC Medical Informatics Decis. Mak., 2022

Data-driven automated classification algorithms for acute health conditions: Applying PheNorm to COVID-19 disease.

Joshua C. Smith, Daniel Park, Jill Whitaker Bey, Michael F. McLemore, Elizabeth Hanchrow, Dax Westerman, Joshua Osmanski, Robert Winter, Arvind Ramaprasan, Ann Kelley, Mary Shea, David J. Cronkite, Saranrat Wittayanukorn, Danijela Stojanovic, Yueqin Zhao, Darren Toh, Kevin B. Johnson, David Aronoff, David Carrell

Proceedings of the AMIA 2022, 2022

2021

Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies.

Ning Shang, Atlas Khan, Fernanda Polubriaginof, Francesca Zanoni, Karla Mehl, David Fasel, Paul E. Drawz, Robert J. Carroll, Joshua C. Denny, Matthew A. Hathcock, Adelaide M. Arruda-Olson, Peggy L. Peissig, Richard A. Dart, Murray H. Brilliant, Eric B. Larson, David S. Carrell, Sarah A. Pendergrass, Shefali Setia Verma, Marylyn D. Ritchie, Barbara Benoit, Vivian S. Gainer, Elizabeth W. Karlson, Adam S. Gordon, Gail P. Jarvik, Ian B. Stanaway, David R. Crosslin, Sumit Mohan, Iuliana Ionita-Laza, Nicholas P. Tatonetti, Ali G. Gharavi, George Hripcsak, Chunhua Weng, Krzysztof Kiryluk

npj Digit. Medicine, 2021

Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network.

Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers.

David S. Carrell, Bradley A. Malin, David J. Cronkite, John S. Aberdeen, Cheryl Clark, Muqun (Rachel) Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman

J. Am. Medical Informatics Assoc., 2020

2019

Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network.

Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng

J. Biomed. Informatics, 2019

Facilitating phenotype transfer using a common data model.

George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng

J. Biomed. Informatics, 2019

Enrichment sampling for a multi-site patient survey using electronic health records and census data.

Nathaniel D. Mercaldo, Kyle B. Brothers, David S. Carrell, Ellen Wright Clayton, John J. Connolly, Ingrid A. Holm, Carol R. Horowitz, Gail P. Jarvik, Terrie E. Kitchner, Rongling Li, Catherine A. McCarty, Jennifer B. McCormick, Valerie D. McManus, Melanie F. Myers, Joshua J. Pankratz, Martha J. Shrubsole, Maureen E. Smith, Sarah C. Stallings, Janet L. Williams, Jonathan S. Schildcrout

J. Am. Medical Informatics Assoc., 2019

The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight.

David S. Carrell, David J. Cronkite, Muqun (Rachel) Li, Steve Nyemba, Bradley A. Malin, John S. Aberdeen, Lynette Hirschman

J. Am. Medical Informatics Assoc., 2019

Facilitating Self-reflection about Values and Self-care Among Individuals with Chronic Conditions.

Catherine Y. Lim, Andrew B. L. Berry, Andrea L. Hartzler, Tad Hirsch, David S. Carrell, Zoë A. Bermet, James D. Ralston

Proceedings of the 2019 CHI Conference on Human Factors in Computing Systems, 2019

2018

Using Natural Language Processing of Free-Text Radiology Reports to Identify Type 1 Modic Endplate Changes.

Hannu T. Huhdanpaa, W. Katherine Tan, Sean D. Rundell, Pradeep Suri, Falgun H. Chokshi, Bryan A. Comstock, Patrick J. Heagerty, Kathryn T. James, Andrew L. Avins, Srdjan S. Nedeljkovic, David R. Nerenz, David F. Kallmes, Patrick H. Luetmer, Karen J. Sherman, Nancy L. Organ, Brent Griffith, Curtis P. Langlotz, David Carrell, Saeed Hassanpour, Jeffrey G. Jarvik

J. Digit. Imaging, 2018

Automatic Text De-Identification: How and When is it Acceptable?

Stéphane M. Meystre, David S. Carrell, Lynette Hirschman, John S. Aberdeen, Paul Fearn, Valentina Petkov, Jonathan C. Silverstein

Proceedings of the AMIA 2018, 2018

Detecting the Presence of an Individual in Phenotypic Summary Data.

Yongtai Liu, Zhiyu Wan, Weiyi Xia, Murat Kantarcioglu, Yevgeniy Vorobeychik, Ellen Wright Clayton, Abel N. Kho, David S. Carrell, Bradley A. Malin

Proceedings of the AMIA 2018, 2018

2017

Challenges in adapting existing clinical natural language processing systems to multiple, diverse health care settings.

David S. Carrell, Robert E. Schoen, Daniel A. Leffler, Michele Morris, Sherri Rose, Andrew Baer, Seth D. Crockett, Rebecca Gourevitch, Katie M. Dean, Ateev Mehrotra

J. Am. Medical Informatics Assoc., 2017

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals.

Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie

BioData Min., 2017

Is an Algorithm Just an Algorithm? How to Define Clinical Concepts for Use in Comparative Safety and Effectiveness Distributed Research Networks.

Jeffrey S. Brown, Robert Ball, David S. Carrell, Leonard W. D'Avolio, Keith Marsolo

Proceedings of the Summit on Clinical Research Informatics, 2017

2016

Optimizing annotation resources for natural language de-identification via a game theoretic framework.

Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Jacqueline Kirby, Bo Li, Yevgeniy Vorobeychik, Bradley A. Malin

J. Biomed. Informatics, 2016

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.

Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny

J. Am. Medical Informatics Assoc., 2016

2015

Using natural language processing to extract mammographic findings.

Hongyuan Gao, Erin J. Aiello Bowles, David Carrell, Diana S. M. Buist

J. Biomed. Informatics, 2015

Desiderata for computable representations of electronic health records-driven phenotype algorithms.

Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris

J. Am. Medical Informatics Assoc., 2015

Using natural language processing to identify problem usage of prescription opioids.

David S. Carrell, David J. Cronkite, Roy E. Palmer, Kathleen Saunders, David E. Gross, Elizabeth T. Masters, Timothy R. Hylan, Michael Von Korff

Int. J. Medical Informatics, 2015

Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR).

Rishika De, Shefali S. Verma, Fotios Drenos, Emily Rose Holzinger, Michael Holmes, Molly A. Hall, David R. Crosslin, David Carrell, Hakon Hakonarson, Gail P. Jarvik, Eric B. Larson, Jennifer A. Pacheco, Laura Rasmussen-Torvik, Carrie Moore, Folkert W. Asselbergs, Jason H. Moore, Marylyn D. Ritchie, Brendan Keating, Diane Gilbert-Diamond

BioData Min., 2015

2014

Design patterns for the development of electronic health record-driven phenotype extraction algorithms.

Luke V. Rasmussen, William K. Thompson, Jennifer A. Pacheco, Abel N. Kho, David Carrell, Jyotishman Pathak, Peggy L. Peissig, Gerard Tromp, Joshua C. Denny, Justin B. Starren

J. Biomed. Informatics, 2014

Toward personalizing treatment for depression: predicting diagnosis and severity.

Sandy Huang, Paea LePendu, Srinivasan V Iyer, Ming Tai-Seale, David Carrell, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2014

De-identification of clinical narratives through writing complexity measures.

Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Bradley A. Malin

Int. J. Medical Informatics, 2014

Linking Adenomas Between Colonoscopy And Pathology Notes For PROSPR.

Scott R. Halgrim, Leslie Sizemore, Edward Pham, Gabrielle Gundersen, David Carrell, Karen Wernli, Jessica Chubak, Carolyn M. Rutter

Proceedings of the AMIA 2014, 2014

2013

Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text.

David Carrell, Bradley A. Malin, John S. Aberdeen, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman

J. Am. Medical Informatics Assoc., 2013

Negation's Not Solved: Reconsidering Negation Annotation and Evaluation.

Stephen T. Wu, Timothy A. Miller, James J. Masanz, Matthew Coarr, David Carrell, Scott R. Halgrim, David Harris, Cheryl Clark

Proceedings of the AMIA 2013, 2013

Predictive Models in Mental Health: From Diagnosis to Treatment.

Sandy Huang, Paea LePendu, Srinivasan V Iyer, Ming Tai-Seale, David Carrell, Nigam Shah

Proceedings of the AMIA 2013, 2013

2012

Importance of multi-modal approaches to effectively identify cataract cases from electronic health records.

Peggy L. Peissig, Luke V. Rasmussen, Richard L. Berg, James G. Linneman, Catherine A. McCarty, Carol Waudby, Lin Chen, Joshua C. Denny, Russell A. Wilke, Jyotishman Pathak, David Carrell, Abel N. Kho, Justin B. Starren

J. Am. Medical Informatics Assoc., 2012

Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network.

Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo

Proceedings of the AMIA 2012, 2012

Using Electronic Health Records to Identify Heart Failure Cohorts with Differentiation for Preserved and Reduced Ejection Fraction.

Suzette J. Bielinski, Jyotishman Pathak, Hongfang Liu, Sunghwan Sohn, Gail P. Jarvik, David Carrell, Naveen Pereira, Véronique L. Roger

Proceedings of the AMIA 2012, 2012

2011

A Strategy for Deploying Secure Cloud-Based Natural Language Processing Systems for Applied Research Involving Clinical Text.

David Carrell

Proceedings of the 44th Hawaii International International Conference on Systems Science (HICSS-44 2011), 2011

2010

An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records.

Jonathan S. Schildcrout, Melissa A. Basford, Jill M. Pulley, Daniel R. Masys, Dan M. Roden, Deede Wang, Christopher G. Chute, Iftikhar J. Kullo, David Carrell, Peggy L. Peissig, Abel N. Kho, Joshua C. Denny

J. Biomed. Informatics, 2010

2007

Research Paper: Patient Web Services Integrated with a Shared Medical Record: Patient Use and Satisfaction.

James D. Ralston, David Carrell, Robert Reid, Melissa A. Anderson, Maureena Moran, James Hereford

J. Am. Medical Informatics Assoc., 2007

2006

Use and Satisfaction of a Patient Web Portal with a Shared Medical Record between Patients and Providers.

James D. Ralston, James Hereford, David Carrell, Maureena Moran

Proceedings of the AMIA 2006, 2006

Variation in Adoption Rates of a Patient Web Portal with a Shared Medical Record by Age, Gender, and Morbidity Level.

David Carrell, James D. Ralston

Proceedings of the AMIA 2006, 2006

2005

Messages, Strands and Threads: Measuring Use of Electronic Patient-Provider Messaging.

David Carrell, James D. Ralston

Proceedings of the AMIA 2005, 2005