David Arndt

According to our database, David Arndt authored at least 18 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

HMDB 5.0: the Human Metabolome Database for 2022.

David S. Wishart, Anchi Guo, Eponine Oler, Fei Wang, Afia Anjum, Harrison Peters, Raynard Dizon, Zinat Sayeeda, Siyang Tian, Brian L. Lee, Mark V. Berjanskii, Robert Mah, Mai Yamamoto, Juan Jovel, Claudia Torres-Calzada, Mickel Hiebert-Giesbrecht, Vicki W. Lui, Dorna Varshavi, Dorsa Varshavi, Dana Allen, David Arndt, Nitya Khetarpal, Aadhavya Sivakumaran, Karxena Harford, Selena Sanford, Kristen Yee, Xuan Cao, Zachary Budinski, Jaanus Liigand, Lun Zhang, Jiamin Zheng, Rupasri Mandal, Naama Karu, Maija Dambrova, Helgi B. Schiöth, Russell Greiner, Vasuk Gautam

Nucleic Acids Res., 2022

2019

PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes.

David Arndt, Ana Marcu, Yongjie Liang, David S. Wishart

Briefings Bioinform., 2019

2018

HMDB 4.0: the human metabolome database for 2018.

David S. Wishart, Yannick Djoumbou Feunang, Ana Marcu, An Chi Guo, Kevin Y. H. Liang, Rosa Vázquez-Fresno, Tanvir Sajed, Daniel Johnson, Carin Li, Naama Karu, Zinat Sayeeda, Elvis J. Lo, Nazanin Assempour, Mark V. Berjanskii, Sandeep Singhal, David Arndt, Yongjie Liang, Hasan Badran, Jason R. Grant, Arnau Serra-Cayuela, Yifeng Liu, Rupa Mandal, Vanessa Neveu, Allison Pon, Craig Knox, Michael Wilson, Claudine Manach, Augustin Scalbert

Nucleic Acids Res., 2018

2017

YMDB 2.0: a significantly expanded version of the yeast metabolome database.

Miguel Ramirez-Gaona, Ana Marcu, Allison Pon, An Chi Guo, Tanvir Sajed, Noah A. Wishart, Naama Karu, Yannick Djoumbou Feunang, David Arndt, David S. Wishart

Nucleic Acids Res., 2017

2016

Heatmapper: web-enabled heat mapping for all.

Sasha Babicki, David Arndt, Ana Marcu, Yongjie Liang, Jason R. Grant, Adam Maciejewski, David S. Wishart

Nucleic Acids Res., 2016

PHASTER: a better, faster version of the PHAST phage search tool.

David Arndt, Jason R. Grant, Ana Marcu, Tanvir Sajed, Allison Pon, Yongjie Liang, David S. Wishart

Nucleic Acids Res., 2016

2015

T3DB: the toxic exposome database.

David S. Wishart, David Arndt, Allison Pon, Tanvir Sajed, Anchi Guo, Yannick Djoumbou, Craig Knox, Michael Wilson, Yongjie Liang, Jason R. Grant, Yifeng Liu, Seyed Ali Goldansaz, Stephen M. Rappaport

Nucleic Acids Res., 2015

CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts.

Noor E. Hafsa, David Arndt, David S. Wishart

Nucleic Acids Res., 2015

2014

DrugBank 4.0: shedding new light on drug metabolism.

Vivian Law, Craig Knox, Yannick Djoumbou, Timothy Jewison, Anchi Guo, Yifeng Liu, Adam Maciejewski, David Arndt, Michael Wilson, Vanessa Neveu, Alexandra Tang, Geraldine Gabriel, Carol Ly, Sakina Adamjee, Zerihun T. Dame, Beomsoo Han, You Zhou, David S. Wishart

Nucleic Acids Res., 2014

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database.

Timothy Jewison, Yilu Su, Fatemeh Miri Disfany, Yongjie Liang, Craig Knox, Adam Maciejewski, Jenna Poelzer, Jessica Huynh, You Zhou, David Arndt, Yannick Djoumbou, Yifeng Liu, Lu Deng, Anchi Guo, Beomsoo Han, Allison Pon, Michael Wilson, Shahrzad Rafatnia, Philip Liu, David S. Wishart

Nucleic Acids Res., 2014

2013

HMDB 3.0 - The Human Metabolome Database in 2013.

David S. Wishart, Timothy Jewison, Anchi Guo, Michael Wilson, Craig Knox, Yifeng Liu, Yannick Djoumbou, Rupasri Mandal, Farid Aziat, Edison Dong, Souhaila Bouatra, Igor Sinelnikov, David Arndt, Jianguo Xia, Philip Liu, Faizath Yallou, Trent C. Bjorndahl, Rolando Perez-Pineiro, Roman Eisner, Felicity Allen, Vanessa Neveu, Russell Greiner, Augustin Scalbert

Nucleic Acids Res., 2013

2012

METAGENassist: a comprehensive web server for comparative metagenomics.

David Arndt, Jianguo Xia, Yifeng Liu, You Zhou, Anchi Guo, Joseph A. Cruz, Igor Sinelnikov, Karen Budwill, Camilla L. Nesbø, David S. Wishart

Nucleic Acids Res., 2012

2008

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

David S. Wishart, David Arndt, Mark V. Berjanskii, Peter Tang, Jianjun Zhou, Guohui Lin

Nucleic Acids Res., 2008

PPT-DB: the protein property prediction and testing database.

David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin

Nucleic Acids Res., 2008

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation.

Scott Montgomerie, Joseph A. Cruz, Savita Shrivastava, David Arndt, Mark V. Berjanskii, David S. Wishart

Nucleic Acids Res., 2008

Protein contact order prediction from primary sequences.

Yi Shi, Jianjun Zhou, David Arndt, David S. Wishart, Guohui Lin

BMC Bioinform., 2008

2007

HMDB: the Human Metabolome Database.

David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser

Nucleic Acids Res., 2007

2004

Dynamic cellular automata: a simple but powerful approach to cellular simulation.

David S. Wishart, Robert Yang, David Arndt, Peter Tang, Joseph A. Cruz

Silico Biol., 2004