David A. Lee

According to our database, David A. Lee authored at least 17 papers between 2000 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

Gene3D: Extensive prediction of globular domains in proteins.

Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees

Nucleic Acids Res., 2018

2017

CATH: an expanded resource to predict protein function through structure and sequence.

Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe

Nucleic Acids Res., 2017

2016

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases.

David A. Lee, Sayoni Das, Natalie L. Dawson, Dragana Dobrijevic, John Ward, Christine A. Orengo

PLoS Comput. Biol., 2016

Gene3D: expanding the utility of domain assignments.

Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees

Nucleic Acids Res., 2016

2015

CATH: comprehensive structural and functional annotations for genome sequences.

Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2015

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo

Nucleic Acids Res., 2015

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo

Bioinform., 2015

2014

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.

Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo

Nucleic Acids Res., 2014

2013

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.

Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2013

2006

Gene3D: modelling protein structure, function and evolution.

Corin Yeats, Michael Maibaum, Russell L. Marsden, Mark Dibley, David A. Lee, Sarah Addou, Christine A. Orengo

Nucleic Acids Res., 2006

2005

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David A. Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2005

2004

EyeSite: a semi-automated database of protein families in the eye.

David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, Christine Slingsby

Nucleic Acids Res., 2004

A structural perspective on genome evolution.

David A. Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2003

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2003

2001

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2001

VIDA: a virus database system for the organization of animal virus genome open reading frames.

M. Mar Albà, David A. Lee, Frances M. G. Pearl, Adrian J. Shepherd, Nigel J. Martin, Christine A. Orengo, Paul Kellam

Nucleic Acids Res., 2001

2000

Assigning genomic sequences to CATH.

Frances M. G. Pearl, David A. Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2000