Daniel MacLean

According to our database, Daniel MacLean authored at least 23 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Improved K-mer Based Prediction of Protein-Protein Interactions With Chaos Game Representation, Deep Learning and Reduced Representation Bias.

Ruth Veevers, Dan MacLean

CoRR, 2023

2021

Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks.

Ruth Kristianingsih, Dan MacLean

BMC Bioinform., 2021

2019

Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence.

Ghanasyam Rallapalli, Pilar Corredor-Moreno, Edward Chalstrey, Martin Page, Daniel MacLean

BMC Bioinform., December, 2019

2015

Using 2<i>k</i> + 2 bubble searches to find single nucleotide polymorphisms in <i>k</i>-mer graphs.

Reda Younsi, Dan MacLean

Bioinform., 2015

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

Graham J. Etherington, Ricardo H. Ramirez-Gonzalez, Dan MacLean

Bioinform., 2015

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Manuel Corpas, Rafael C. Jiménez, Erik Bongcam-Rudloff, Aidan Budd, Michelle D. Brazas, Pedro L. Fernandes, Bruno A. Gaëta, Celia W. G. van Gelder, Eija Korpelainen, Fran Lewitter, Annette McGrath, Daniel MacLean, Patricia M. Palagi, Kristian Rother, Jan Taylor, Allegra Via, Mick Watson, Maria Victoria Schneider, Teresa K. Attwood

Bioinform., 2015

2013

SVGenes: a library for rendering genomic features in scalable vector graphic format.

Graham J. Etherington, Daniel MacLean

Bioinform., 2013

2012

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Ricardo Ramirez-Gonzalez, Raoul Jean Pierre Bonnal, Mario Cáccamo, Daniel MacLean

Source Code Biol. Medicine, 2012

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Raoul Jean Pierre Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Daniel MacLean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger A. Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins

Bioinform., 2012

2011

TurSOM: A paradigm bridging Turing's unorganized machines and self-organizing maps demonstrating dual self-organization.

Derek Beaton, Iren Valova, Daniel MacLean

Neurocomputing, 2011

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Ricardo Ramirez-Gonzalez, Mario Cáccamo, Daniel MacLean

Bioinform., 2011

2010

Fractal initialization for high-quality mapping with self-organizing maps.

Iren Valova, Derek Beaton, Alexandre Buer, Daniel MacLean

Neural Comput. Appl., 2010

PhosPhAt: the <i>Arabidopsis thaliana</i> phosphorylation site database. An update.

Pawel Durek, Robert Schmidt, Joshua L. Heazlewood, Alexandra Jones, Daniel MacLean, Axel Nagel, Birgit Kersten, Waltraud X. Schulze

Nucleic Acids Res., 2010

CQoCO: A measure for comparative quality of coverage and organization for self-organizing maps.

Derek Beaton, Iren Valova, Daniel MacLean

Neurocomputing, 2010

NIPSOM: Parallel Architecture and Implementation of a Growing SOM.

Iren Valova, Derek Beaton, Daniel MacLean, John Hammond

Comput. J., 2010

Finding sRNA generative locales from high-throughput sequencing data with NiBLS.

Daniel MacLean, Vincent Moulton, David J. Studholme

BMC Bioinform., 2010

2009

The Use of TurSOM for Color Image Segmentation.

Derek Beaton, Iren Valova, Daniel MacLean

Proceedings of the IEEE International Conference on Systems, 2009

TurSOM: A Turing inspired Self-Organizing Map.

Derek Beaton, Iren Valova, Daniel MacLean

Proceedings of the International Joint Conference on Neural Networks, 2009

Growing mechanisms and cluster identification with TurSOM.

Derek Beaton, Iren Valova, Daniel MacLean

Proceedings of the International Joint Conference on Neural Networks, 2009

2008

A toolkit for analysing large-scale plant small RNA datasets.

Simon Moxon, Frank Schwach, Tamas Dalmay, Daniel MacLean, David J. Studholme, Vincent Moulton

Bioinform., 2008

Identification of Patterns via Region-Growing Parallel SOM Neural Network.

Iren Valova, Daniel MacLean, Derek Beaton

Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

2007

Parallel Growing SOM Monitored by Genetic Algorithm.

Daniel MacLean, Iren Valova

Proceedings of the International Joint Conference on Neural Networks, 2007

2006

A Parallel Implementation of a Growing SOM Promoting Independent Neural Networks over Distributed Input Space.

John Hammond, Daniel MacLean, Iren Valova

Proceedings of the International Joint Conference on Neural Networks, 2006