Daniel M. Zuckerman

Orcid: 0000-0001-7662-2031

According to our database1, Daniel M. Zuckerman authored at least 13 papers between 2004 and 2023.

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Bibliography

2023
Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference.
PLoS Comput. Biol., 2023

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol.
Int. J. High Perform. Comput. Appl., 2023

2022
Weighted ensemble: Recent mathematical developments.
CoRR, 2022

2020
A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms.
PLoS Comput. Biol., 2020

A kinetic mechanism for enhanced selectivity of membrane transport.
PLoS Comput. Biol., 2020

Optimizing Weighted Ensemble Sampling of Steady States.
Multiscale Model. Simul., 2020

2016
Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.
PLoS Comput. Biol., 2016

2015
A proposal for regularly updated review/survey articles: "Perpetual Reviews".
CoRR, 2015

2012
Accelerating molecular monte carlo simulations using distance and orientation-dependent energy tables: Tuning from atomistic accuracy to smoothed "coarse-grained" models.
J. Comput. Chem., 2012

2011
Rapid sampling of all-atom peptides using a library-based polymer-growth approach.
J. Comput. Chem., 2011

Extending fragment-based free energy calculations with library monte carlo simulation: Annealing in interaction space.
J. Comput. Chem., 2011

2009
Absolute free energies estimated by combining precalculated molecular fragment libraries.
J. Comput. Chem., 2009

2004
Efficient use of nonequilibrium measurement to estimate free energy differences for molecular systems.
J. Comput. Chem., 2004


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