Daniel Hoffmann

According to our database, Daniel Hoffmann authored at least 33 papers between 1988 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

scBubbletree: computational approach for visualization of single cell RNA-seq data.

Simo Kitanovski, Yingying Cao, Dimitris Ttoouli, Farnoush Farahpour, Jun Wang, Daniel Hoffmann

BMC Bioinform., December, 2024

2021

Classifier uncertainty: evidence, potential impact, and probabilistic treatment.

Niklas Tötsch, Daniel Hoffmann

PeerJ Comput. Sci., 2021

2020

A Self-Adaptive and Self-Sufficient Energy Harvesting System.

Mario Mösch, Gerhard Fischerauer, Daniel Hoffmann

Sensors, 2020

IgGeneUsage: differential gene usage in immune repertoires.

Simo Kitanovski, Daniel Hoffmann

Bioinform., 2020

2018

Locating Large, Flexible Ligands on Proteins.

Jean-Noël Grad, Alba Gigante, Christoph Wilms, Jan Nikolaj Dybowski, Ludwig Ohl, Christian Ottmann, Carsten Schmuck, Daniel Hoffmann

J. Chem. Inf. Model., 2018

2017

Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes.

Mohammadkarim Saeedghalati, Farnoush Farahpour, Bettina Budeus, Anja Lange, Astrid M. Westendorf, Marc Seifert, Ralf Küppers, Daniel Hoffmann

PLoS Comput. Biol., 2017

2016

Using A/B testing in MOOC environments.

Jan Renz, Daniel Hoffmann, Thomas Staubitz, Christoph Meinel

Proceedings of the Sixth International Conference on Learning Analytics & Knowledge, 2016

2015

Proprioceptive Interaction.

Pedro Lopes, Alexandra Ion, Willi Müller, Daniel Hoffmann, Patrik Jonell, Patrick Baudisch

Proceedings of the 33rd Annual ACM Conference Extended Abstracts on Human Factors in Computing Systems, 2015

2014

Signaling Domain of Sonic Hedgehog as Cannibalistic Calcium-Regulated Zinc-Peptidase.

Rocio Rebollido-Rios, Shyam Bandari, Christoph Wilms, Stanislav Jakuschev, Andrea Vortkamp, Kay Grobe, Daniel Hoffmann

PLoS Comput. Biol., 2014

A simple structure-based model for the prediction of HIV-1 co-receptor tropism.

Dominik Heider, Jan Dybowski, Christoph Wilms, Daniel Hoffmann

BioData Min., 2014

2013

GravitySpace: tracking users and their poses in a smart room using a pressure-sensing floor.

Alan Bränzel, Christian Holz, Daniel Hoffmann, Dominik Schmidt, Marius Knaust, Patrick Lühne, René Meusel, Stephan Richter, Patrick Baudisch

Proceedings of the 2013 ACM SIGCHI Conference on Human Factors in Computing Systems, 2013

2012

The Normal-Mode Entropy in the MM/GBSA Method: Effect of System Truncation, Buffer Region, and Dielectric Constant.

Samuel Genheden, Oliver Kuhn, Paulius Mikulskis, Daniel Hoffmann, Ulf Ryde

J. Chem. Inf. Model., 2012

Unsupervised Dimension Reduction Methods for Protein Sequence Classification.

Dominik Heider, Christoph Bartenhagen, Jan Nikolaj Dybowski, Sascha Hauke, Martin Pyka, Daniel Hoffmann

Proceedings of the Data Analysis, Machine Learning and Knowledge Discovery, 2012

2011

Interpol: An R package for preprocessing of protein sequences.

Dominik Heider, Daniel Hoffmann

BioData Min., 2011

Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers.

Jan Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider

BioData Min., 2011

2010

Prediction of Co-Receptor Usage of HIV-1 from Genotype.

Jan Nikolaj Dybowski, Dominik Heider, Daniel Hoffmann

PLoS Comput. Biol., 2010

Predicting Bevirimat resistance of HIV-1 from genotype.

Dominik Heider, Jens Verheyen, Daniel Hoffmann

BMC Bioinform., 2010

Spatial contiguity and implicit learning in hypertext.

Seungoh Paek, Daniel Hoffmann, Antonios Saravanos

Proceedings of the HT'10, 2010

2009

A Novel Algorithm for Macromolecular Epitope Matching.

Stanislav Jakuschev, Daniel Hoffmann

Algorithms, 2009

2008

Evolutionary Pareto-optimization of stably folding peptides.

Wolfram Gronwald, Tim Hohm, Daniel Hoffmann

BMC Bioinform., 2008

2006

A Multiobjective Evolutionary Method for the Design of Peptidic Mimotopes.

Tim Hohm, Philipp Limbourg, Daniel Hoffmann

J. Comput. Biol., 2006

Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV.

Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005

Learning Multiple Evolutionary Pathways from Cross-Sectional Data.

Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer

J. Comput. Biol., 2005

Computational methods for the design of effective therapies against drug resistant HIV strains.

Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer

Bioinform., 2005

Mtreemix: a software package for learning and using mixture models of mutagenetic trees.

Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer

Bioinform., 2005

Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking.

Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer

Proceedings of the Knowledge Discovery in Databases: PKDD 2005, 2005

A multi-objective evolutionary approach to peptide structure redesign and stabilization.

Tim Hohm, Daniel Hoffmann

Proceedings of the Genetic and Evolutionary Computation Conference, 2005

2003

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.

Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter

Nucleic Acids Res., 2003

Methods for optimizing antiviral combination therapies.

Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002

Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype.

Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig

Proc. Natl. Acad. Sci. USA, 2002

2001

Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests.

Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig

IEEE Intell. Syst., 2001

Identifying drug resistance-associated patterns in HIV genotypes.

Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

1988

Microprocessor-based robotic system for control of fluid connections in the cardiac catheterization laboratory.

Lloyd A. Marks, Kenneth L. Short, Daniel Hoffmann, Albert Lew

IEEE Trans. Biomed. Eng., 1988