Daniel H. Huson

According to our database, Daniel H. Huson authored at least 67 papers between 1992 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Leverage the Explainability of Transformer Models to Improve the DNA 5-Methylcytosine Identification (Student Abstract).

Wenhuan Zeng, Daniel H. Huson

Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023

Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification.

Anupam Gautam, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Abhishake Lahiri, Daniel H. Huson, Sandip Paul

Briefings Bioinform., September, 2023

Visualizing incompatibilities in phylogenetic trees using consensus outlines.

Daniel H. Huson, Banu Cetinkaya

Frontiers Bioinform., May, 2023

NeighborNet: improved algorithms and implementation.

David Bryant, Daniel H. Huson

Frontiers Bioinform., May, 2023

MeganServer: facilitating interactive access to metagenomic data on a server.

Anupam Gautam, Wenhuan Zeng, Daniel H. Huson

Bioinform., March, 2023

2022

DeepToA: an ensemble deep-learning approach to predicting the theater of activity of a microbiome.

Wenhuan Zeng, Anupam Gautam, Daniel H. Huson

Bioinform., October, 2022

2021

On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19.

Wenhuan Zeng, Anupam Gautam, Daniel H. Huson

Comput., 2021

Tegula - exploring a galaxy of two-dimensional periodic tilings.

Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson

Comput. Aided Geom. Des., 2021

2020

MAIRA- real-time taxonomic and functional analysis of long reads on a laptop.

Benjamin Albrecht, Caner Bagci, Daniel H. Huson

BMC Bioinform., 2020

2018

Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees.

Daniel H. Huson, Simone Linz

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Dynamics of the human gut phageome during antibiotic treatment.

Anna Górska, Silke Peter, Matthias Willmann, Ingo Autenrieth, Robert Schlaberg, Daniel H. Huson

Comput. Biol. Chem., 2018

2017

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.

Mohammad Alanjary, Brent Kronmiller, Martina Adamek, Kai Blin, Tilmann Weber, Daniel H. Huson, Benjamin Philmus, Nadine Ziemert

Nucleic Acids Res., 2017

SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?

Monika Balvociute, Daniel H. Huson

BMC Genom., 2017

2016

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Daniel H. Huson, Sina Beier, Isabell Flade, Anna Górska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh, Rewati Tappu

PLoS Comput. Biol., 2016

RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.

Chao Xie, Chin Lui Wesley Goi, Daniel H. Huson, Peter F. R. Little, Rohan B. H. Williams

BMC Bioinform., 2016

2014

A poor man's BLASTX - high-throughput metagenomic protein database search using PAUDA.

Daniel H. Huson, Chao Xie

Bioinform., 2014

2012

Fast computation of minimum hybridization networks.

Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson

Bioinform., 2012

2011

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.

Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson

BMC Bioinform., 2011

Tanglegrams for rooted phylogenetic trees and networks.

Céline Scornavacca, Franziska Zickmann, Daniel H. Huson

Bioinform., 2011

2010

New common ancestor problems in trees and directed acyclic graphs.

Johannes Fischer, Daniel H. Huson

Inf. Process. Lett., 2010

Short clones or long clones? A simulation study on the use of paired reads in metagenomics.

Suparna Mitra, Max Schubach, Daniel H. Huson

BMC Bioinform., 2010

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.

Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H. Huson

Bioinform., 2010

Phylogenetic Networks - Concepts, Algorithms and Applications.

Daniel H. Huson, Regula Rupp, Céline Scornavacca

Cambridge University Press, ISBN: 978-0-521-75596-2, 2010

2009

Special Section: Phylogenetics.

Daniel H. Huson, Vincent Moulton, Mike A. Steel

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Drawing Rooted Phylogenetic Networks.

Daniel H. Huson

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Methods for comparative metagenomics.

Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster

BMC Bioinform., 2009

Visual and statistical comparison of metagenomes.

Suparna Mitra, Bernhard Klar, Daniel H. Huson

Bioinform., 2009

Computing galled networks from real data.

Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul

Bioinform., 2009

2008

Improved Layout of Phylogenetic Networks.

Philippe Gambette, Daniel H. Huson

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Summarizing Multiple Gene Trees Using Cluster Networks.

Daniel H. Huson, Regula Rupp

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

Dendroscope: An interactive viewer for large phylogenetic trees.

Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp

BMC Bioinform., 2007

OSLay: optimal syntenic layout of unfinished assemblies.

Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson

Bioinform., 2007

COPYCAT : cophylogenetic analysis tool.

Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker

Bioinform., 2007

Beyond Galled Trees - Decomposition and Computation of Galled Networks.

Daniel H. Huson, Tobias H. Klöpper

Proceedings of the Research in Computational Molecular Biology, 2007

etagenome Analysis using Megan.

Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

CrossLink: visualization and exploration of sequence relationships between (micro) RNAs.

Tobias Dezulian, Martin H. Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson

Nucleic Acids Res., 2006

Identification of plant microRNA homologs.

Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson

Bioinform., 2006

Reducing Distortion in Phylogenetic Networks.

Daniel H. Huson, Mike A. Steel, Jim Whitfield

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

Whole-genome prokaryotic phylogeny.

Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster

Bioinform., 2005

Reconstruction of Reticulate Networks from Gene Trees.

Daniel H. Huson, Tobias H. Klöpper, Peter J. Lockhart, Mike A. Steel

Proceedings of the Research in Computational Molecular Biology, 2005

Computing recombination networks from binary sequences.

Daniel H. Huson, Tobias H. Klöpper

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

Phylogenetic Super-Networks from Partial Trees.

Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel

IEEE ACM Trans. Comput. Biol. Bioinform., 2004

Constructing Splits Graphs.

Andreas W. M. Dress, Daniel H. Huson

IEEE ACM Trans. Comput. Biol. Bioinform., 2004

Phylogenetic trees based on gene content.

Daniel H. Huson, Mike A. Steel

Bioinform., 2004

VisRD--visual recombination detection.

Kristoffer Forslund, Daniel H. Huson, Vincent Moulton

Bioinform., 2004

Syntenic Layout of Two Assemblies of Related Genomes.

Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson

Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003

Distance Corrections on Recombinant Sequences.

David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

A meta-viewer for biomolecular data.

Olaf Delgado-Friedrichs, Tobias Dezulian, Daniel H. Huson

Proceedings of the 33. Jahrestagung der Gesellschaft für Informatik, Innovative Informatikanwendungen, INFORMATIK 2003, Frankfurt am Main, Germany, September 29, 2003

2002

The greedy path-merging algorithm for contig scaffolding.

Daniel H. Huson, Knut Reinert, Eugene W. Myers

J. ACM, 2002

Segment Match Refinement and Applications.

Aaron L. Halpern, Daniel H. Huson, Knut Reinert

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

2001

Comparing Assemblies Using Fragments and Mate-Pairs.

Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

The greedy path-merging algorithm for sequence assembly.

Daniel H. Huson, Knut Reinert, Eugene W. Myers

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Visualization challenges for a new cyberpharmaceutical computing paradigm.

Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail

Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, 2001

Design of a compartmentalized shotgun assembler for the human genome.

Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

4-Regular Vertex-Transitive Tilings of E³.

Olaf Delgado-Friedrichs, Daniel H. Huson

Discret. Comput. Geom., 2000

The Conserved Exon Method for Gene Finding.

Vineet Bafna, Daniel H. Huson

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999

Hybrid Tree Reconstruction Methods.

Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph

ACM J. Exp. Algorithmics, 1999

Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction.

Daniel H. Huson, Scott Nettles, Tandy J. Warnow

J. Comput. Biol., 1999

Tiling Space by Platonic Solids, I.

Olaf Delgado-Friedrichs, Daniel H. Huson

Discret. Comput. Geom., 1999

Estimating Large Distances in Phylogenetic Reconstruction.

Daniel H. Huson, Kelly Ann Smith, Tandy J. Warnow

Proceedings of the Algorithm Engineering, 1999

Obtaining highly accurate topology estimates of evolutionary trees from very short sequences.

Daniel H. Huson, Scott Nettles, Tandy J. Warnow

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Solving Large Scale Phylogenetic Problems using DCM2.

Daniel H. Huson, Lisa Vawter, Tandy J. Warnow

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space.

Nikolai P. Dolbilin, Andreas W. M. Dress, Daniel H. Huson

Discret. Comput. Geom., 1998

SplitsTree: analyzing and visualizing evolutionary data.

Daniel H. Huson

Bioinform., 1998

1996

Analyzing and Visualizing Sequence and Distance Data Using SplitsTree.

Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton

Discret. Appl. Math., 1996

1995

Visualization of Periodic Tilings.

Daniel H. Huson

Proceedings of the Visualization and Mathematics, 1995

1992

The Classification of Quasi-Regular Polyhedra of Genus 2.

Reinhard Franz, Daniel H. Huson

Discret. Comput. Geom., 1992