Daniel Faria

According to our database, Daniel Faria authored at least 58 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The Immunopeptidomics Ontology (ImPO).

Daniel Faria, Patrícia Eugénio, Marta Contreiras Silva, Laura Balbi, Georges Bedran, Ashwin Adrian Kallor, Susana Nunes, Aleksander Palkowski, Michal Waleron, Javier Antonio Alfaro, Catia Pesquita

Database J. Biol. Databases Curation, January, 2024

Upgrade of Lark Compiler Generator to Support Attribute Grammars.

Daniel Faria, Tiago João Baptista, Pedro Rangel Henriques

Proceedings of the 13th Symposium on Languages, Applications and Technologies, 2024

Complex Multi-Ontology Alignment Through Geometric Operations on Language Embeddings.

Marta Contreiras Silva, Daniel Faria, Catia Pesquita

Proceedings of the ECAI 2024 - 27th European Conference on Artificial Intelligence, 19-24 October 2024, Santiago de Compostela, Spain, 2024

2023

Results of the Ontology Alignment Evaluation Initiative 2023.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

Results for Matcha and Matcha-DL in OAEI 2023.

Daniel Faria, Marta Contreiras Silva, Pedro Cotovio, Lucas Ferraz, Laura Balbi, Catia Pesquita

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

2022

Results of the Ontology Alignment Evaluation Initiative 2022.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Cássia Trojahn, Chantelle Verhey, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

Matcha and Matcha-DL results for OAEI 2022.

Daniel Faria, Marta Contreiras Silva, Pedro Cotovio, Patrícia Eugénio, Catia Pesquita

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

Extending AgreementMakerLight to Perform Holistic Ontology Matching.

Marta Contreiras Silva, Daniel Faria, Catia Pesquita

Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

Matching Multiple Ontologies to Build a Knowledge Graph for Personalized Medicine.

Marta Contreiras Silva, Daniel Faria, Catia Pesquita

Proceedings of the Semantic Web - 19th International Conference, 2022

Blockchain Analytics - Real-time Log Management in Healthcare.

Tiago Guimarães, Ricardo Duarte, Bruno Pinheiro, Daniel Faria, Paulo Gomes, Manuel Filipe Santos

Proceedings of the 13th International Conference on Ambient Systems, 2022

2021

Integrating knowledge graphs for explainable artificial intelligence in biomedicine.

Marta Contreiras Silva, Daniel Faria, Catia Pesquita

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Results of the Ontology Alignment Evaluation Initiative 2021.

Mina Abd Nikooie Pour, Alsayed Algergawy, Florence Amardeilh, Reihaneh Amini, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Pascal Hitzler, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Jan Portisch, Catherine Roussey, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Challenges of evaluating complex alignments.

Beatriz Lima, Daniel Faria, Catia Pesquita

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Pattern-Guided Association Rule Mining for Complex Ontology Alignment.

Beatriz Lima, Daniel Faria, Catia Pesquita

Proceedings of the ISWC 2021 Posters, 2021

VOWLMap: Graph-based Ontology Alignment Visualization and Editing.

Ana Guerreiro, Catia Pesquita, Daniel Faria

Proceedings of the Sixth International Workshop on the Visualization and Interaction for Ontologies and Linked Data co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

AML and AMLC results for OAEI 2021.

Daniel Faria, Beatriz Lima, Marta Contreiras Silva, Francisco M. Couto, Catia Pesquita

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

2020

Towards evaluating complex ontology alignments.

Lu Zhou, Élodie Thiéblin, Michelle Cheatham, Daniel Faria, Catia Pesquita, Cássia Trojahn dos Santos, Ondrej Zamazal

Knowl. Eng. Rev., 2020

Crowd-assessing quality in uncertain data linking datasets.

Daniel Faria, Alfio Ferrara, Ernesto Jiménez-Ruiz, Stefano Montanelli, Catia Pesquita

Knowl. Eng. Rev., 2020

CorkOakDB - The Cork Oak Genome Database Portal.

Cirenia Arias-Baldrich, Marta Contreiras Silva, Filippo Bergeretti, Inês Chaves, Célia Miguel, Nelson J. M. Saibo, Daniel Sobral, Daniel Faria, Pedro M. Barros

Database J. Biol. Databases Curation, 2020

Results of the Ontology Alignment Evaluation Initiative 2020.

Mina Abd Nikooie Pour, Alsayed Algergawy, Reihaneh Amini, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Clément Jonquet, Naouel Karam, Abderrahmane Khiat, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Pascal Hitzler, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

OAEI 2020 results for AML and AMLC.

Beatriz Lima, Daniel Faria, Francisco M. Couto, Isabel F. Cruz, Catia Pesquita

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

2019

User validation in ontology alignment: functional assessment and impact.

Huanyu Li, Zlatan Dragisic, Daniel Faria, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Catia Pesquita

Knowl. Eng. Rev., 2019

AML and AMLC Results for OAEI 2019.

Daniel Faria, Catia Pesquita, Teemu Tervo, Francisco M. Couto, Isabel F. Cruz

Proceedings of the 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Results of the Ontology Alignment Evaluation Initiative 2019.

Alsayed Algergawy, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou

Proceedings of the 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

2018

Tackling the challenges of matching biomedical ontologies.

Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz

J. Biomed. Semant., 2018

Introducing the HOBBIT platform into the ontology alignment evaluation campaign.

Ernesto Jiménez-Ruiz, Tzanina Saveta, Ondrej Zamazal, Sven Hertling, Michael Röder, Irini Fundulaki, Axel-Cyrille Ngonga Ngomo, Mohamed Ahmed Sherif, Amina Annane, Zohra Bellahsene, Sadok Ben Yahia, Gayo Diallo, Daniel Faria, Marouen Kachroudi, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Maximilian Mackeprang, Majid Mohammadi, Maciej Rybinski, Booma Sowkarthiga Balasubramani, Cássia Trojahn

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

Results of AML participation in OAEI 2018.

Daniel Faria, Catia Pesquita, Booma Sowkarthiga Balasubramani, Teemu Tervo, David Carriço, Rodrigo Garrilha, Francisco M. Couto, Isabel F. Cruz

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

Results of the Ontology Alignment Evaluation Initiative 2018.

Alsayed Algergawy, Michelle Cheatham, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Daniela Schmidt, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

2017

Results of AML in OAEI 2017.

Daniel Faria, Booma S. Balasubramani, Vivek R. Shivaprabhu, Isabela Mott, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz

Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017

Results of the Ontology Alignment Evaluation Initiative 2017.

Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Kristian Kolthoff, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Majid Mohammadi, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Élodie Thiéblin, Konstantin Todorov, Cássia Trojahn, Ondrej Zamazal

Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017

2016

OAEI 2016 results of AML.

Daniel Faria, Catia Pesquita, Booma S. Balasubramani, Catarina Martins, João Cardoso, Hugo Curado, Francisco M. Couto, Isabel F. Cruz

Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

User Validation in Ontology Alignment.

Zlatan Dragisic, Valentina Ivanova, Patrick Lambrix, Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita

Proceedings of the Semantic Web - ISWC 2016, 2016

Results of the Ontology Alignment Evaluation Initiative 2016.

Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Konstantin Todorov, Cássia Trojahn dos Santos, Ondrej Zamazal

Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

Ontology-Based Approach for Heterogeneity Analysis of EA Models.

João Cardoso, Marzieh Bakhshandeh, Daniel Faria, Catia Pesquita, José Borbinha

Proceedings of the Business Process Management Workshops, 2016

2015

AML results for OAEI 2015.

Daniel Faria, Catarina Martins, Amruta Nanavaty, Daniela Oliveira, Booma Sowkarthiga, Aynaz Taheri, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz

Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015

Results of the Ontology Alignment Evaluation Initiative 2015.

Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Roger Granada, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Alessandro Solimando, Cássia Trojahn dos Santos, Ondrej Zamazal

Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015

Visualization and editing of biomedical ontology alignments in AgreementMakerLight.

Catarina Martins, Daniel Faria, Catia Pesquita

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Building reference alignments for compound matching of multiple ontologies using OBO cross-products.

Catia Pesquita, Michelle Cheatham, Daniel Faria, Joana Barros, Emanuel Santos, Francisco M. Couto

Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014

AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching.

Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto

Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

AgreementMakerLight results for OAEI 2014.

Daniel Faria, Catarina Martins, Amruta Nanavaty, Aynaz Taheri, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto

Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014

Towards Annotating Potential Incoherences in BioPortal Mappings.

Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita, Emanuel Santos, Francisco M. Couto

Proceedings of the Semantic Web - ISWC 2014, 2014

Results of the Ontology Alignment Evaluation Initiative 2014.

Zlatan Dragisic, Kai Eckert, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Roger Granada, Valentina Ivanova, Ernesto Jiménez-Ruiz, Andreas Oskar Kempf, Patrick Lambrix, Stefano Montanelli, Heiko Paulheim, Dominique Ritze, Pavel Shvaiko, Alessandro Solimando, Cássia Trojahn dos Santos, Ondrej Zamazal, Bernardo Cuenca Grau

Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014

Towards Visualizing the Alignment of Large Biomedical Ontologies.

Catia Pesquita, Daniel Faria, Emanuel Santos, Jean-Marc Neefs, Francisco M. Couto

Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

2013

Benchmarking some Portuguese S&T system research units

Francisco M. Couto, Daniel Faria, Bruno Tavares, Pedro Gonçalves, Paulo Veríssimo

CoRR, 2013

Ontology alignment repair through modularization and confidence-based heuristics.

Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto

CoRR, 2013

What's in a 'nym'? Synonyms in Biomedical Ontology Matching.

Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto

Proceedings of the Semantic Web - ISWC 2013, 2013

To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.

Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M. Couto

Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013

AgreementMakerLight results for OAEI 2013.

Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto

Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013

The AgreementMakerLight Ontology Matching System.

Daniel Faria, Catia Pesquita, Emanuel Santos, Matteo Palmonari, Isabel F. Cruz, Francisco M. Couto

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2013 Conferences, 2013

2012

Testing the AgreementMaker System in the Anatomy Task of OAEI 2012

Daniel Faria, Catia Pesquita, Emanuel Santos, Francisco M. Couto, Cosmin Stroe, Isabel F. Cruz

CoRR, 2012

2011

The OCRC Fuel Cell Lab Safety System: A Self-Stabilizing Safety-Critical System.

William Leal, Micah McCreery, Daniel Faria

Proceedings of the Stabilization, Safety, and Security of Distributed Systems, 2011

The Biomedical Ontology Applications (BOA) Framework.

Bruno Tavares, Hugo P. Bastos, Daniel Faria, João D. Ferreira, Tiago Grego, Catia Pesquita, Francisco M. Couto

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

Semantic Similarity in Biomedical Ontologies.

Catia Pesquita, Daniel Faria, André O. Falcão, Phillip W. Lord, Francisco M. Couto

PLoS Comput. Biol., 2009

Enzyme classification with peptide programs: a comparative study.

Daniel Faria, António E. N. Ferreira, André O. Falcão

BMC Bioinform., 2009

Measuring coherence between electronic and manual annotations in biological databases.

Catia Pesquita, Daniel Faria, Francisco M. Couto

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

2008

Metrics for GO based protein semantic similarity: a systematic evaluation.

Catia Pesquita, Daniel Faria, Hugo P. Bastos, António E. N. Ferreira, André O. Falcão, Francisco M. Couto

BMC Bioinform., 2008

BOLOS: BLAST & Ontology Linked-hOmologue Stars.

Hugo P. Bastos, Catia Pesquita, Daniel Faria, André O. Falcão

Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

Peptide programs: applying fragment programs to protein classification.

André O. Falcão, Daniel Faria, António E. N. Ferreira

Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008