Daniel A. Beard

According to our database, Daniel A. Beard authored at least 17 papers between 2000 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Hypoxic pulmonary vasoconstriction as a regulator of alveolar-capillary oxygen flux: A computational model of ventilation-perfusion matching.

Andrew D. Marquis, Filip Jezek, David J. Pinsky, Daniel A. Beard

PLoS Comput. Biol., 2021

2018

Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats.

Michael A. Moxley, Kalyan C. Vinnakota, Jason N. Bazil, Nathan R. Qi, Daniel A. Beard

PLoS Comput. Biol., 2018

2017

The feasibility of genome-scale biological network inference using Graphics Processing Units.

Raghuram Thiagarajan, Amir Alavi, Jagdeep T. Podichetty, Jason N. Bazil, Daniel A. Beard

Algorithms Mol. Biol., 2017

2014

Arterial Stiffening Provides Sufficient Explanation for Primary Hypertension.

Klas H. Pettersen, Scott M. Bugenhagen, Javaid Nauman, Daniel A. Beard, Stig W. Omholt

PLoS Comput. Biol., 2014

2011

Minimum Information About a Simulation Experiment (MIASE).

Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère

PLoS Comput. Biol., 2011

A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway.

Xin Li, Fan Wu, Feng Qi, Daniel A. Beard

Database J. Biol. Databases Curation, 2011

2009

Strong Inference for Systems Biology.

Daniel A. Beard, Martin J. Kushmerick

PLoS Comput. Biol., 2009

An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model.

Dexuan Xie, Ranjan K. Dash, Daniel A. Beard

J. Comput. Phys., 2009

Roles of the creatine kinase system and myoglobin in maintaining energetic state in the working heart.

Fan Wu, Daniel A. Beard

BMC Syst. Biol., 2009

Generating rate equations for complex enzyme systems by a computer-assisted systematic method.

Feng Qi, Ranjan K. Dash, Yu Han, Daniel A. Beard

BMC Bioinform., 2009

BISEN: Biochemical Simulation Environment.

Joep Vanlier, Fan Wu, Feng Qi, Kalyan C. Vinnakota, Yu Han, Ranjan K. Dash, F. Yang, Daniel A. Beard

Bioinform., 2009

2008

Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory.

William J. Heuett, Daniel A. Beard, Hong Qian

BMC Syst. Biol., 2008

2006

Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Energy Metabolism.

Daniel A. Beard

PLoS Comput. Biol., 2006

Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.

Daniel A. Beard

PLoS Comput. Biol., 2006

2005

A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.

Daniel A. Beard

PLoS Comput. Biol., 2005

2003

Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm.

Qing Zhang, Daniel A. Beard, Tamar Schlick

J. Comput. Chem., 2003

2000

Computational challenges in simulating large DNA over long times.

Tamar Schlick, Daniel A. Beard, Jing Huang, Daniel Strahs, Xiaoliang Qian

Comput. Sci. Eng., 2000