Dan He

According to our database, Dan He authored at least 40 papers between 2006 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

Efficient algorithms for polyploid haplotype phasing.

Dan He, Subrata Saha, Richard Finkers, Laxmi Parida

BMC Genom., 2018

2017

IPED2: Inheritance Path Based Pedigree Reconstruction Algorithm for Complicated Pedigrees.

Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

MUSE: A Multi-locus Sampling-based Epistasis Algorithm for Quantitative Genetic Trait Prediction.

Dan He, Laxmi Parida

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2016

MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction.

Dan He, Irina Rish, David Haws, Laxmi Parida

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Does encoding matter? A novel view on the quantitative genetic trait prediction problem.

Dan He, Laxmi Parida

BMC Bioinform., 2016

Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction.

Dan He, David Kuhn, Laxmi Parida

Bioinform., 2016

2015

Data-driven encoding for quantitative genetic trait prediction.

Dan He, Zhanyong Wang, Laxmi Parida

BMC Bioinform., January, 2015

Pattern matching with wildcards and length constraints using maximum network flow.

Abdullah N. Arslan, Dan He, Yu He, Xindong Wu

J. Discrete Algorithms, 2015

MINED: An Efficient Mutual Information Based Epistasis Detection Method to Improve Quantitative Genetic Trait Prediction.

Dan He, Zhanyong Wang, Laxmi Parida

Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

Performance evaluation of different encoding strategies for quantitative genetic trait prediction.

Oyetunji E. Ogundijo, Dan He, Laxmi Parida

Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

SAME: a sampling-based multi-locus epistasis algorithm for quantitative genetic trait prediction.

Dan He, Laxmi Parida

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

SemInf: A Burst-Based Semantic Influence Model for Biomedical Topic Influence.

Dan He, Douglas Stott Parker Jr.

IEEE J. Biomed. Health Informatics, 2014

IPED2X: A robust pedigree reconstruction algorithm for complicated pedigrees.

Dan He, Eleazar Eskin

J. Bioinform. Comput. Biol., 2014

Transductive HSIC Lasso.

Dan He, Irina Rish, Laxmi Parida

Proceedings of the 2014 SIAM International Conference on Data Mining, 2014

2013

IPED: Inheritance Path-based Pedigree Reconstruction Algorithm Using Genotype Data.

Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin

J. Comput. Biol., 2013

Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data.

Dan He, Buhm Han, Eleazar Eskin

J. Comput. Biol., 2013

MINT: Mutual Information based Transductive Feature Selection for Genetic Trait Prediction.

Dan He, Irina Rish, David Haws, Simon Teyssedre, Zivan Karaman, Laxmi Parida

CoRR, 2013

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.

Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin

Bioinform., 2013

Optimized retrieval algorithms for personalized content aggregation.

Dan He, Douglas Stott Parker Jr.

Proceedings of the IEEE 14th International Conference on Information Reuse & Integration, 2013

IPEDX: An exact algorithm for pedigree reconstruction using genotype data.

Dan He, Eleazar Eskin

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Efficient Algorithms for Human Genetic Variation Detection using High-throughput Sequencing Techniques.

Dan He

PhD thesis, 2012

2011

CLAP: Collaborative pattern mining for distributed information systems.

Xingquan Zhu, Bin Li, Xindong Wu, Dan He, Chengqi Zhang

Decis. Support Syst., 2011

Mining Approximate Repeating Patterns from Sequence Data with Gap Constraints.

Dan He, Xingquan Zhu, Xindong Wu

Comput. Intell., 2011

Genotyping common and rare variation using overlapping pool sequencing.

Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin

BMC Bioinform., 2011

Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.

Dan He, Farhad Hormozdiari, Nicholas A. Furlotte, Eleazar Eskin

Bioinform., 2011

Mining Research Topic-Related Influence between Academia and Industry.

Dan He

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2011

Learning the Funding Momentum of Research Projects.

Dan He, Douglas Stott Parker Jr.

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2011

How Does Research Evolve? Pattern Mining for Research Meme Cycles.

Dan He, Xingquan Zhu, Douglas Stott Parker Jr.

Proceedings of the 11th IEEE International Conference on Data Mining, 2011

Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials.

Dan He, Pratima Kunwar, Eleazar Eskin, Helen Horton, Peter B. Gilbert, Tomer Hertz

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

Detection and reconstruction of tandemly organized de novo copy number variations.

Dan He, Nicholas A. Furlotte, Eleazar Eskin

BMC Bioinform., 2010

Optimal algorithms for haplotype assembly from whole-genome sequence data.

Dan He, Arthur Choi, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin

Bioinform., 2010

Effective Algorithms for Fusion Gene Detection.

Dan He, Eleazar Eskin

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Rule Synthesizing from Multiple Related Databases.

Dan He, Xindong Wu, Xingquan Zhu

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2010

Topic dynamics: an alternative model of bursts in streams of topics.

Dan He, Douglas Stott Parker Jr.

Proceedings of the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2010

2009

Error Detection and Uncertainty Modeling for Imprecise Data.

Dan He, Xingquan Zhu, Xindong Wu

Proceedings of the ICTAI 2009, 2009

Approximate Repeating Pattern Mining with Gap Requirements.

Dan He, Xingquan Zhu, Xindong Wu

Proceedings of the ICTAI 2009, 2009

2008

Cleansing Noisy Data Streams.

Xingquan Zhu, Peng Zhang, Xindong Wu, Dan He, Chengqi Zhang, Yong Shi

Proceedings of the 8th IEEE International Conference on Data Mining (ICDM 2008), 2008

2007

SAIL-APPROX: An Efficient On-Line Algorithm for Approximate Pattern Matching with Wildcards and Length Constraints.

Dan He, Xindong Wu, Xingquan Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching.

Dan He, Abdullah N. Arslan, Yu He, Xindong Wu

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Ontology-based feature weighting for biomedical literature classification.

Dan He, Xindong Wu

Proceedings of the 2006 IEEE International Conference on Information Reuse and Integration, 2006