Dan F. DeBlasio

According to our database, Dan F. DeBlasio authored at least 26 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

How Much Data Is Sufficient to Learn High-Performing Algorithms?

Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik

J. ACM, October, 2024

Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets.

Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford

J. Comput. Biol., 2024

2021

How much data is sufficient to learn high-performing algorithms? generalization guarantees for data-driven algorithm design.

Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik

Proceedings of the STOC '21: 53rd Annual ACM SIGACT Symposium on Theory of Computing, 2021

2020

More Accurate Transcript Assembly via Parameter Advising.

Dan F. DeBlasio, Kwanho Kim, Carl Kingsford

J. Comput. Biol., 2020

2019

Locality-sensitive hashing for the edit distance.

Guillaume Marçais, Dan F. DeBlasio, Prashant Pandey, Carl Kingsford

Bioinform., 2019

Practical Universal k-mer Sets for Minimizer Schemes.

Dan F. DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford, Guillaume Marçais

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.

Anupama Jigisha, Margherita Francescatto, Farzana Rahman, Nazeefa Fatima, Dan F. DeBlasio, Avinash Kumar Shanmugam, Venkata P. Satagopam, Alberto Santos, Pandurang Kolekar, Magali Michaut, Emre Guney

PLoS Comput. Biol., 2018

Adaptive Local Realignment of Protein Sequences.

Dan F. DeBlasio, John D. Kececioglu

J. Comput. Biol., 2018

Reflections on a journey: a retrospective of the ISCB Student Council symposium series.

Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman

BMC Bioinform., 2018

Asymptotically optimal minimizers schemes.

Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford

Bioinform., 2018

2017

Parameter Advising for Multiple Sequence Alignment

Dan F. DeBlasio, John D. Kececioglu

Computational Biology 26, Springer, ISBN: 978-3-319-64917-7, 2017

Learning Parameter-Advising Sets for Multiple Sequence Alignment.

Dan F. DeBlasio, John D. Kececioglu

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Core column prediction for protein multiple sequence alignments.

Dan F. DeBlasio, John D. Kececioglu

Algorithms Mol. Biol., 2017

Boosting Alignment Accuracy by Adaptive Local Realignment.

Dan F. DeBlasio, John D. Kececioglu

Proceedings of the Research in Computational Molecular Biology, 2017

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

BMC Bioinform., February, 2016

Parameter Advising for Multiple Sequence Alignment.

Dan F. DeBlasio

PhD thesis, 2016

Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising.

Dan F. DeBlasio, John D. Kececioglu

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

Adaptive Local Realignment via Parameter Advising.

Dan F. DeBlasio, John D. Kececioglu

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

Highlights from the tenth ISCB Student Council Symposium 2014.

Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico

BMC Bioinform., 2015

Parameter advising for multiple sequence alignment.

Dan F. DeBlasio, John D. Kececioglu

BMC Bioinform., 2015

Ensemble multiple sequence alignment via advising.

Dan F. DeBlasio, John D. Kececioglu

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Learning parameter sets for alignment advising.

Dan F. DeBlasio, John D. Kececioglu

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment.

John D. Kececioglu, Dan F. DeBlasio

J. Comput. Biol., 2013

2012

A Memory Efficient Method for Structure-Based RNA Multiple Alignment.

Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising.

Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu

Proceedings of the Research in Computational Molecular Biology, 2012

2009

PMFastR: A New Approach to Multiple RNA Structure Alignment.

Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009