Damion M. Dooley

According to our database, Damion M. Dooley authored at least 29 papers between 2016 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Lewis Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall

J. Biomed. Semant., December, 2024

Concretizing plan specifications as realizables within the OBO foundry.

William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley

J. Biomed. Semant., December, 2024

Reuse of the FoodOn ontology in a knowledge base of food composition data.

Katherine Thornton, Kenneth Seals-Nutt, Mika Matsuzaki, Damion M. Dooley

Semantic Web, 2024

Food process ontology requirements.

Damion M. Dooley, Magalie Weber, Liliana Ibanescu, Matthew Lange, Lauren E. Chan, Larisa N. Soldatova, Chen Yang, Robert Warren, Cogan Shimizu, Hande McGinty, William Hsiao

Semantic Web, 2024

OBO Foundry food ontology interconnectivity.

Damion M. Dooley, Liliana Andrés-Hernández, Georgeta Bordea, Leigh Carmody, Duccio Cavalieri, Lauren E. Chan, Pol Castellano-Escuder, Carl Lachat, Fleur Mougin, Francesco Vitali, Chen Yang, Magalie Weber, Hande Küçük-McGinty, Matthew Lange

Semantic Web, 2024

What is food? An investigation into food realizables.

Adrien Barton, Fumiaki Toyoshima, Damion M. Dooley

Proceedings of the Joint Ontology Workshops (JOWO), 2024

2023

Ontological how and why: action and objective of planned processes in the food domain.

Damion M. Dooley, Tarini Naravane

Frontiers Artif. Intell., February, 2023

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.

Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur

Nucleic Acids Res., January, 2023

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

Sabrina Toro, Anna V. Anagnostopoulos, Sue Bello, Kai Lewis Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig, Justin P. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall

CoRR, 2023

The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards.

John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He

Proceedings of the Joint Ontology Workshops 2023 Episode IX: The Quebec Summer of Ontology co-located with the 13th International Conference on Formal Ontology in Information Systems (FOIS 2023), 2023

Tracking the Functional Effects of SARS-CoV-2 Genomic Variants: an Ontology-Driven Approach.

Madeline Iseminger, Muhammad Zohaib Anwar, Rhiannon Cameron, Damion M. Dooley, Paul Gordon, Emma J. Griffiths, Anoosha Sehar, Khushi Vora, William Hsiao

Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

Besoins ontologiques pour la transformation des aliments.

Damion M. Dooley, Magalie Weber, Liliana Ibanescu, Matthew Lange, Lauren E. Chan, Larisa N. Soldatova, Chen Yang, Robert Warren, Cogan Shimizu, Hande McGinty, William Hsiao

Proceedings of the 34es Journées francophones d'Ingénierie des Connaissances, 2023

2022

Charting Past, Present, and Future Research in the Semantic Web and Interoperability.

Abderahman Rejeb, John G. Keogh, Wayne Martindale, Damion M. Dooley, Edward Smart, Steven Simske, Samuel Fosso Wamba, John G. Breslin, Kosala Yapa Bandara, Subhasis Thakur, Kelly Liu, Bridgette Crowley, Sowmya Desaraju, Angela Ospina, Horia Bradau

Future Internet, 2022

Foundational Development of an Occupation Ontology.

Yongqun He, Samuel Smith, Damion M. Dooley

Proceedings of the Joint Ontology Workshops 2022 Episode VIII: The Svear Sommar of Ontology, 2022

Toward an Occupation Ontology, OccO.

Sam Smith, Damion M. Dooley, Eric Merrell, John Beverley, Yongqun He

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

Standardization of assay representation in the Ontology for Biomedical Investigations.

Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.

Database J. Biol. Databases Curation, 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters

Database J. Biol. Databases Curation, 2021

Streamlining FoodOn Seafood Nomenclature using a Semi-automated ROBOT Template-driven Approach.

Anoosha Sehar, Damion M. Dooley, Amanda Windsor, William L. Hsiao

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

OBO Foundry Food Ontology Interconnectivity.

Damion M. Dooley, Liliana Andrés-Hernández, Georgeta Bordea, Leigh Carmody, Duccio Cavalieri, Lauren E. Chan, Pol Castellano-Escuder, Carl Lachat, Fleur Mougin, Francesco Vitali, Chen Yang, Magalie Weber, Matthew Lange

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

2020

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.

Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur

Nucleic Acids Res., 2020

2019

3D Visualization of Application Ontology Class Hierarchies.

Damion M. Dooley, William W. L. Hsiao

Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing.

Damion M. Dooley, Ivan S. Gill, Emma J. Griffiths, William L. Hsiao

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

NGBO: Introducing -omics Data into Biobanking Ontology.

Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, William W. L. Hsiao

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

NGBO: The Introduction of -omics Data to Biobanking Ontology.

Dalia A. Alghamdi, Damion M. Dooley, Emma J. Griffiths, Gurinder Pal Gosal, William W. L. Hsiao

Proceedings of the ISWC 2018 Posters & Demonstrations, Industry and Blue Sky Ideas Tracks co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, USA, October 8th - to, 2018

2017

The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform.

Damion M. Dooley, Emma J. Griffiths, Gurinder Gosal, Fiona S. L. Brinkman, William W. L. Hsiao

Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017

FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata.

Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

2016

Sequence database versioning for command line and Galaxy bioinformatics servers.

Damion M. Dooley, Aaron J. Petkau, Gary H. Van Domselaar, William W. L. Hsiao

Bioinform., 2016

FoodON: A Global Farm-to-Fork Food Ontology.

Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

An OBI Ontology Datum Proof Sheet.

Damion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016