Damian Szklarczyk

Orcid: 0000-0002-4052-5069

According to our database1, Damian Szklarczyk authored at least 23 papers between 2010 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2023
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Nucleic Acids Res., January, 2023

eggNOG 6.0: enabling comparative genomics across 12 535 organisms.
Nucleic Acids Res., January, 2023

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Nucleic Acids Res., January, 2023

2022
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.
Briefings Bioinform., 2022

2021
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res., 2021

2020
The Quest for Orthologs benchmark service and consensus calls in 2020.
Nucleic Acids Res., 2020

2019
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Nucleic Acids Res., 2019

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res., 2019

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies.
BMC Bioinform., 2019

2017
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res., 2017

2016
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res., 2016

WeGET: predicting new genes for molecular systems by weighted co-expression.
Nucleic Acids Res., 2016

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016

2015
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Nucleic Acids Res., 2015

2014
eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res., 2014

STITCH 4: integration of protein-chemical interactions with user data.
Nucleic Acids Res., 2014

2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic Acids Res., 2013

2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012

STITCH 3: zooming in on protein-chemical interactions.
Nucleic Acids Res., 2012

Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs.
BMC Syst. Biol., 2012

2011
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res., 2011

2010
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res., 2010

STITCH 2: an interaction network database for small molecules and proteins.
Nucleic Acids Res., 2010


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