D. Louis Collins

Orcid: 0000-0002-8432-7021

Affiliations:
  • McGill University, Montreal, Canada


According to our database1, D. Louis Collins authored at least 240 papers between 1991 and 2024.

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Bibliography

2024
An Evaluation of Low-Cost Hardware on 3D Ultrasound Reconstruction Accuracy.
Proceedings of the Simplifying Medical Ultrasound - 5th International Workshop, 2024

2023
Hessian-Based Similarity Metric for Multimodal Medical Image Registration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

2022
Fast Streamline Search: An Exact Technique for Diffusion MRI Tractography.
Neuroinformatics, 2022

DARQ: Deep learning of quality control for stereotaxic registration of human brain MRI to the T1w MNI-ICBM 152 template.
NeuroImage, 2022

Estimating medical image registration error and confidence: A taxonomy and scoping review.
Medical Image Anal., 2022

2021
Spine and Individual Vertebrae Segmentation in Computed Tomography Images Using Geometric Flows and Shape Priors.
Frontiers Comput. Sci., 2021

Fast Tractography Streamline Search.
Proceedings of the Computational Diffusion MRI - 12th International Workshop, 2021

Evaluation of Low-Cost Hardware Alternatives for 3D Freehand Ultrasound Reconstruction in Image-Guided Neurosurgery.
Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

3D MRI Brain Tumour Segmentation with Autoencoder Regularization and Hausdorff Distance Loss Function.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2021

2020
Interaction Driven Enhancement of Depth Perception in Angiographic Volumes.
IEEE Trans. Vis. Comput. Graph., 2020

Brain volume loss in individuals over time: Source of variance and limits of detectability.
NeuroImage, 2020

Neuroanatomical changes in white and grey matter after sleeve gastrectomy.
NeuroImage, 2020

Automated separation of diffusely abnormal white matter from focal white matter lesions on MRI in multiple sclerosis.
NeuroImage, 2020

The state-of-the-art in ultrasound-guided spine interventions.
Medical Image Anal., 2020

Automatic extraction of vertebral landmarks from ultrasound images: A pilot study.
Comput. Biol. Medicine, 2020

MARIN: an open-source mobile augmented reality interactive neuronavigation system.
Int. J. Comput. Assist. Radiol. Surg., 2020

2019
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge.
IEEE Trans. Medical Imaging, 2019

A clinical-anatomical signature of Parkinson's disease identified with partial least squares and magnetic resonance imaging.
NeuroImage, 2019

The hippocampal-to-ventricle ratio (HVR): Presentation of a manual segmentation protocol and preliminary evidence.
NeuroImage, 2019

Predictive model of spread of Parkinson's pathology using network diffusion.
NeuroImage, 2019

Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance.
NeuroImage, 2019

An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion.
CoRR, 2019

Cognitive load associations when utilizing auditory display within image-guided neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2019

Toward real-time rigid registration of intra-operative ultrasound with preoperative CT images for lumbar spinal fusion surgery.
Int. J. Comput. Assist. Radiol. Surg., 2019

Early Prediction of Alzheimer's Disease Progression Using Variational Autoencoders.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Assessment of Cognitive Load in the Context of Neurosurgery.
Proceedings of the 41th Annual Meeting of the Cognitive Science Society, 2019

2018
The EADC-ADNI harmonized protocol for hippocampal segmentation: A validation study.
NeuroImage, 2018

PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space.
NeuroImage, 2018

Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity.
NeuroImage, 2018

A comparison of publicly available linear MRI stereotaxic registration techniques.
NeuroImage, 2018

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.
NeuroImage, 2018

An augmented-reality system prototype for guiding transcranial Doppler ultrasound examination.
Multim. Tools Appl., 2018

Special Issue on MICCAI 2017.
Medical Image Anal., 2018

Guest editorial for the IJCARS special issue on MICCAI 2017.
Int. J. Comput. Assist. Radiol. Surg., 2018

A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Fast Registration of CT with Intra-operative Ultrasound Images for Spine Surgery.
Proceedings of the Computational Methods and Clinical Applications for Spine Imaging, 2018

2017
Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer's Disease.
IEEE Trans. Medical Imaging, 2017

A comparison of accurate automatic hippocampal segmentation methods.
NeuroImage, 2017

SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data.
NeuroImage, 2017

Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging.
NeuroImage, 2017

Brain shift in neuronavigation of brain tumors: A review.
Medical Image Anal., 2017

IBIS: an OR ready open-source platform for image-guided neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2017

Towards Automatic Collateral Circulation Score Evaluation in Ischemic Stroke Using Image Decompositions and Support Vector Machines.
Proceedings of the Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 2017

2016
Development of cortical shape in the human brain from 6 to 24 months of age via a novel measure of shape complexity.
NeuroImage, 2016

An Optimized PatchMatch for multi-scale and multi-feature label fusion.
NeuroImage, 2016

MINC 2.0: A Flexible Format for Multi-Modal Images.
Frontiers Neuroinformatics, 2016

Cyberinfrastructure for Open Science at the Montreal Neurological Institute.
Frontiers Neuroinformatics, 2016

User-friendly freehand ultrasound calibration using Lego bricks and automatic registration.
Int. J. Comput. Assist. Radiol. Surg., 2016

Towards a Second Brain Images of Tumours for Evaluation (BITE2) Database.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2016

Towards Augmented Reality Guided Craniotomy Planning in Tumour Resections.
Proceedings of the Medical Imaging and Augmented Reality - 7th International Conference, 2016

2015
Automatic Deformable MR-Ultrasound Registration for Image-Guided Neurosurgery.
IEEE Trans. Medical Imaging, 2015

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).
IEEE Trans. Medical Imaging, 2015

Temporal Hierarchical Adaptive Texture CRF for Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI.
IEEE Trans. Medical Imaging, 2015

Automatic SWI Venography Segmentation Using Conditional Random Fields.
IEEE Trans. Medical Imaging, 2015

Probabilistic Multiple Sclerosis Lesion Classification Based on Modeling Regional Intensity Variability and Local Neighborhood Information.
IEEE Trans. Biomed. Eng., 2015

Diurnal fluctuations in brain volume: Statistical analyses of MRI from large populations.
NeuroImage, 2015

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.
NeuroImage, 2015

Improving recorded volume in mesial temporal lobe by optimizing stereotactic intracranial electrode implantation planning.
Int. J. Comput. Assist. Radiol. Surg., 2015

Multi-contrast unbiased MRI atlas of a Parkinson's disease population.
Int. J. Comput. Assist. Radiol. Surg., 2015

Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease.
Int. J. Comput. Assist. Radiol. Surg., 2015

Information processing in computer-assisted interventions: 5th international conference, 2014.
Int. J. Comput. Assist. Radiol. Surg., 2015

Deformable registration of preoperative MR, pre-resection ultrasound, and post-resection ultrasound images of neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2015

Augmented reality in neurovascular surgery: feasibility and first uses in the operating room.
Int. J. Comput. Assist. Radiol. Surg., 2015

An analysis of tracking error in image-guided neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2015

Shape index distribution based local surface complexity applied to the human cortex.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Atlas-Guided Transcranial Doppler Ultrasound Examination with a Neuro-Surgical Navigation System: Case Study.
Proceedings of the Clinical Image-Based Procedures. Translational Research in Medical Imaging, 2015

Augmented Reality for Specific Neurovascular Surgical Tasks.
Proceedings of the Augmented Environments for Computer-Assisted Interventions, 2015

Improving Patient Specific Neurosurgical Models with Intraoperative Ultrasound and Augmented Reality Visualizations in a Neuronavigation Environment.
Proceedings of the Clinical Image-Based Procedures. Translational Research in Medical Imaging, 2015

Interaction-Based Registration Correction for Improved Augmented Reality Overlay in Neurosurgery.
Proceedings of the Augmented Environments for Computer-Assisted Interventions, 2015

2014
An Evaluation of Depth Enhancing Perceptual Cues for Vascular Volume Visualization in Neurosurgery.
IEEE Trans. Vis. Comput. Graph., 2014

Nonrigid Registration of Ultrasound and MRI Using Contextual Conditioned Mutual Information.
IEEE Trans. Medical Imaging, 2014

Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template.
NeuroImage, 2014

Self-similarity weighted mutual information: A new nonrigid image registration metric.
Medical Image Anal., 2014

Nonlocal Intracranial Cavity Extraction.
Int. J. Biomed. Imaging, 2014

SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels.
Proceedings of the Biomedical Image Registration - 6th International Workshop, 2014

Optimized PatchMatch for Near Real Time and Accurate Label Fusion.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Simulation of Ultrasound Images for Validation of MR to Ultrasound Registration in Neurosurgery.
Proceedings of the Augmented Environments for Computer-Assisted Interventions, 2014

Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer's Disease.
Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Augmented Reality in Neurovascular Surgery: First Experiences.
Proceedings of the Augmented Environments for Computer-Assisted Interventions, 2014

Is It Possible to Differentiate the Impact of Pediatric Monophasic Demyelinating Disorders and Multiple Sclerosis After a First Episode of Demyelination?
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2014

A Generative Model for Automatic Detection of Resolving Multiple Sclerosis Lesions.
Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013
Temporally Consistent Probabilistic Detection of New Multiple Sclerosis Lesions in Brain MRI.
IEEE Trans. Medical Imaging, 2013

Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence.
NeuroImage, 2013

Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning.
NeuroImage, 2013

A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood.
NeuroImage, 2013

Evidence for a cerebral cortical thickness network anti-correlated with amygdalar volume in healthy youths: Implications for the neural substrates of emotion regulation.
NeuroImage, 2013

Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging.
Medical Image Anal., 2013

Multi-site study of surgical practice in neurosurgery based on surgical process models.
J. Biomed. Informatics, 2013

The state of the art of visualization in mixed reality image guided surgery.
Comput. Medical Imaging Graph., 2013

Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations.
Int. J. Comput. Assist. Radiol. Surg., 2013

Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease.
Int. J. Comput. Assist. Radiol. Surg., 2013

Automatic Optimization of Depth Electrode Trajectory Planning.
Proceedings of the Clinical Image-Based Procedures. Translational Research in Medical Imaging, 2013

Hierarchical Probabilistic Gabor and MRF Segmentation of Brain Tumours in MRI Volumes.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Volume Visualization for Neurovascular Augmented Reality Surgery.
Proceedings of the Augmented Reality Environments for Medical Imaging and Computer-Assisted Interventions, 2013

Adaptive Voxel, Texture and Temporal Conditional Random Fields for Detection of Gad-Enhancing Multiple Sclerosis Lesions in Brain MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Automatic Markov Random Field Segmentation of Susceptibility-Weighted MR Venography.
Proceedings of the Clinical Image-Based Procedures. Translational Research in Medical Imaging, 2013

Cortical Surface Analysis of Multi-contrast MR Data to Improve Detection of Cortical Pathology in Multiple Sclerosis.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

2012
DVV: A Taxonomy for Mixed Reality Visualization in Image Guided Surgery.
IEEE Trans. Vis. Comput. Graph., 2012

Multi-Modal Image Registration Based on Gradient Orientations of Minimal Uncertainty.
IEEE Trans. Medical Imaging, 2012

Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI Using Conditional Random Fields.
IEEE Trans. Medical Imaging, 2012

Genetic influences on thinning of the cerebral cortex during development.
NeuroImage, 2012

Brain templates and atlases.
NeuroImage, 2012

BEaST: Brain extraction based on nonlocal segmentation technique.
NeuroImage, 2012

Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease.
NeuroImage, 2012

New methods for MRI denoising based on sparseness and self-similarity.
Medical Image Anal., 2012

A CANDLE for a deeper in vivo insight.
Medical Image Anal., 2012

Ultrasound-CT registration of vertebrae without reconstruction.
Int. J. Comput. Assist. Radiol. Surg., 2012

Validation of automated ultrasound-CT registration of vertebrae.
Int. J. Comput. Assist. Radiol. Surg., 2012

Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2012

Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery.
Int. J. Comput. Assist. Radiol. Surg., 2012

A multi-modal approach to computer-assisted deep brain stimulation trajectory planning.
Int. J. Comput. Assist. Radiol. Surg., 2012

Augmented Reality Visualization for Guidance in Neurovascular Surgery.
Proceedings of the Medicine Meets Virtual Reality 19 - NextMed, 2012

Visualizing the path of blood flow in static vessel images for image guided surgery of cerebral arteriovenous malformations.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Self-similarity Weighted Mutual Information: A New Nonrigid Image Registration Metric.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Hierarchical Conditional Random Fields for Detection of Gad-Enhancing Lesions in Multiple Sclerosis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Spatio-temporal Regularization for Longitudinal Registration to an Unbiased 3D Individual Template.
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2012

Towards Computer-Assisted Deep Brain Stimulation Targeting with Multiple Active Contacts.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

A Prospective Evaluation of Computer-Assisted Deep Brain Stimulation Trajectory Planning.
Proceedings of the Clinical Image-Based Procedures. From Planning to Intervention, 2012

A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data.
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2012

Atlas-based clustering of sulcal patterns - Application to the left inferior frontal sulcus.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Atlas-Based Segmentation of the Subthalamic Nucleus, Red Nucleus, and Substantia Nigra for Deep Brain Stimulation by Incorporating Multiple MRI Contrasts.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2012

Fast and Robust Registration Based on Gradient Orientations: Case Study Matching Intra-operative Ultrasound to Pre-operative MRI in Neurosurgery.
Proceedings of the Information Processing in Computer-Assisted Interventions, 2012

2011
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Medical Imaging, 2011

Trimmed-Likelihood Estimation for Focal Lesions and Tissue Segmentation in Multisequence MRI for Multiple Sclerosis.
IEEE Trans. Medical Imaging, 2011

Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls.
NeuroImage, 2011

Appearance-based modeling for segmentation of hippocampus and amygdala using multi-contrast MR imaging.
NeuroImage, 2011

An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space).
NeuroImage, 2011

Unbiased average age-appropriate atlases for pediatric studies.
NeuroImage, 2011

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation.
NeuroImage, 2011

Regional brain atrophy in children with multiple sclerosis.
NeuroImage, 2011

Evaluating intensity normalization on MRIs of human brain with multiple sclerosis.
Medical Image Anal., 2011

Towards accurate, robust and practical ultrasound-CT registration of vertebrae for image-guided spine surgery.
Int. J. Comput. Assist. Radiol. Surg., 2011

New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation.
Int. J. Comput. Assist. Radiol. Surg., 2011

Adapted MRF Segmentation of Multiple Sclerosis Lesions Using Local Contextual Information.
Proceedings of the Medical Image Understanding and Analysis, 2011

A Realistic Test and Development Environment for Mixed Reality in Neurosurgery.
Proceedings of the Augmented Environments for Computer-Assisted Interventions, 2011

Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Spatial intensity prior correction for tissue segmentation in the developing human brain.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

2010
Feature-based morphometry: Discovering group-related anatomical patterns.
NeuroImage, 2010

Evaluation of automated techniques for the quantification of grey matter atrophy in patients with multiple sclerosis.
NeuroImage, 2010

Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion.
NeuroImage, 2010

Corrigendum to "Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change" [NeuroImage 49 (2010) 1601-1611].
NeuroImage, 2010

Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change.
NeuroImage, 2010

Non-local MRI upsampling.
Medical Image Anal., 2010

An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images.
Medical Image Anal., 2010

Robust Rician noise estimation for MR images.
Medical Image Anal., 2010

MRI Superresolution Using Self-Similarity and Image Priors.
Int. J. Biomed. Imaging, 2010

Optimal Gaussian Mixture Models of Tissue Intensities in Brain MRI of Patients with Multiple-Sclerosis.
Proceedings of the Machine Learning in Medical Imaging, First International Workshop, 2010

Segmentation of Cortical MS Lesions on MRI Using Automated Laminar Profile Shape Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Exploring Cortical Folding Pattern Variability Using Local Image Features.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

Hierarchical Multimodal Image Registration Based on Adaptive Local Mutual Information.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Detection of Gad-Enhancing Lesions in Multiple Sclerosis Using Conditional Random Fields.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Bayesian Classification of Multiple Sclerosis Lesions in Longitudinal MRI Using Subtraction Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

An Anthropomorphic Polyvinyl Alcohol Triple-Modality Brain Phantom Based on Colin27.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

DVV: Towards a Taxonomy for Mixed Reality Visualization in Image Guided Surgery.
Proceedings of the Medical Imaging and Augmented Reality - 5th International Workshop, 2010

Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images.
Proceedings of the Medical Imaging and Augmented Reality - 5th International Workshop, 2010

Improved Precision in the Measurement of Longitudinal Global and Regional Volumetric Changes via a Novel MRI Gradient Distortion Characterization and Correction Technique.
Proceedings of the Medical Imaging and Augmented Reality - 5th International Workshop, 2010

2009
Sensitivity of voxel-based morphometry analysis to choice of imaging protocol at 3 T.
NeuroImage, 2009

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
NeuroImage, 2009

Relating one-year cognitive change in mild cognitive impairment to baseline MRI features.
NeuroImage, 2009

Motion correction of multi-frame PET data in neuroreceptor mapping: Simulation based validation.
NeuroImage, 2009

Clustering of atlas-defined cortical regions based on relaxation times and proton density.
NeuroImage, 2009

A Comparative Study of Monoscopic and Stereoscopic Display for a Probe-Positioning Task.
Proceedings of the Medicine Meets Virtual Reality 17 - NextMed: Design for/the Well Being, 2009

Multi-channel MRI segmentation with graph cuts using spectral gradient and multidimensional Gaussian mixture model.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Feature-Based Morphometry.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Multiple Sclerosis Lesion Segmentation Using an Automatic Multimodal Graph Cuts.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

An Object-Based Method for Rician Noise Estimation in MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Towards Accurate, Automatic Segmentation of the Hippocampus and Amygdala from MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Automatically Learning Cortical Folding Patterns.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
MRI-Based Automated Computer Classification of Probable AD Versus Normal Controls.
IEEE Trans. Medical Imaging, 2008

A geometric flow for segmenting vasculature in proton-density weighted MRI.
Medical Image Anal., 2008

Towards a validation of atlas warping techniques.
Medical Image Anal., 2008

Deformable Ultrasound Registration without Reconstruction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Human Brain Myelination from Birth to 4.5 Years.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

MRI inter-packet movement correction for images acquired with non-complementary data.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Development of FMRI techniques for planning in functional neurosurgery for Parkinson's disease.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Three-dimensional reconstruction of serial histological mouse brain sections.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
Joint level-set shape modeling and appearance modeling for brain structure segmentation.
NeuroImage, 2007

Voxel-based analysis of the evolution of magnetization transfer ratio to quantify remyelination and demyelination with histopathological validation in a multiple sclerosis lesion.
NeuroImage, 2007

Clinical validation of vessel-based registration for correction of brain-shift.
Medical Image Anal., 2007

Validation of vessel-based registration for correction of brain shift.
Medical Image Anal., 2007

2006
Twenty New Digital Brain Phantoms for Creation of Validation Image Data Bases.
IEEE Trans. Medical Imaging, 2006

Gray and white matter density changes in monozygotic and same-sex dizygotic twins discordant for schizophrenia using voxel-based morphometry.
NeuroImage, 2006

MR-based neurological disease classification methodology: Application to lateralization of seizure focus in temporal lobe epilepsy.
NeuroImage, 2006

The creation of a brain atlas for image guided neurosurgery using serial histological data.
NeuroImage, 2006

A new improved version of the realistic digital brain phantom.
NeuroImage, 2006

A Statistical Parts-Based Appearance Model of Inter-subject Variability.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Symmetric Atlasing and Model Based Segmentation: An Application to the Hippocampus in Older Adults.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Automated Analysis of Multi Site MRI Phantom Data for the NIHPD Project.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Towards a Multi-modal Atlas for Neurosurgical Planning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Realistic Simulated MRI and SPECT Databases.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Bayesian MS Lesion Classification Modeling Regional and Local Spatial Information.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

2005
Local magnetization transfer ratio signal inhomogeneity is related to subsequent change in MTR in lesions and normal-appearing white-matter of multiple sclerosis patients.
NeuroImage, 2005

Hippocampal shape analysis using medial surfaces.
NeuroImage, 2005

Maximum a Posteriori Local Histogram Estimation for Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Predicting Clinical Variable from MRI Features: Application to MMSE in MCI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Anatomical and Electrophysiological Validation of an Atlas for Neurosurgical Planning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

2004
Object-based morphometry of the cerebral cortex.
IEEE Trans. Medical Imaging, 2004

Focal white matter density changes in schizophrenia: reduced inter-hemispheric connectivity.
NeuroImage, 2004

Relating neocortical pathology to disability progression in multiple sclerosis using MRI.
NeuroImage, 2004

Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy.
NeuroImage, 2004

Tuning and comparing spatial normalization methods.
Medical Image Anal., 2004

Brain morphometry using 3D moment invariants.
Medical Image Anal., 2004

Vessel Driven Correction of Brain Shift.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Temporal Lobe Epilepsy Surgical Outcome Prediction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

A Multi-scale Geometric Flow for Segmenting Vasculature in MRI.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

2003
Retrospective Evaluation of Inter-subject Brain Registration.
IEEE Trans. Medical Imaging, 2003

Automated detection of focal cortical dysplasia lesions using computational models of their MRI characteristics and texture analysis.
NeuroImage, 2003

Multivariate Statistics for Detection of MS Activity in Serial Multimodal MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

3D Moment Invariant Based Morphometry.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Temporal Lobe Epilepsy Lateralization Based on MR Image Intensity and Registration Features.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

The Creation of a Brain Atlas for Image Guided Neurosurgery Using Serial Histological Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Object-Based Strategy for Morphometry of the Cerebral Cortex.
Proceedings of the Information Processing in Medical Imaging, 2003

2002
Appearance-Based Segmentation of Medial Temporal Lobe Structures.
NeuroImage, 2002

Computational Models of MRI Characteristics of Focal Cortical Dysplasia Improve Lesion Detection.
NeuroImage, 2002

Statistical Analysis of Longitudinal MRI Data: Applications for Detection of Disease Activity in MS.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

On the Classification of Temporal Lobe Epilepsy Using MR Image Appearance.
Proceedings of the 16th International Conference on Pattern Recognition, 2002

2001
A Unified Statistical Approach to Deformation-Based Morphometry.
NeuroImage, 2001

Application of Information Technology: A Four-Dimensional Probabilistic Atlas of the Human Brain.
J. Am. Medical Informatics Assoc., 2001

Knowledge-based extraction of cerebral vasculature from anatomical MRI.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Retrospective Evaluation of Inter-subject Brain Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Analysis of 3D Deformation Fields for Appearance-Based Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Automatic Non-linear MRI-Ultrasound Registration for the Correction of Intra-operative Brain Deformations.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Automated Estimation of Brain Volume in Multiple Sclerosis with BICCR.
Proceedings of the Information Processing in Medical Imaging, 2001

1999
Automated Extraction and Variability Analysis of Sulcal Neuroanatomy.
IEEE Trans. Medical Imaging, 1999

ANIMAL+INSECT: Improved Cortical Structure Segmentation.
Proceedings of the Information Processing in Medical Imaging, 1999

1998
Automated atlas integration and interactive 3-dimensional visualization tools for planning and guidance of functional neurosurgery.
IEEE Trans. Medical Imaging, 1998

Design and Construction of a Realistic Digital Brain Phantom.
IEEE Trans. Medical Imaging, 1998

Automatic Identification of Cortical Sulci Using a 3D Probabilistic Atlas.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

Non-linear Cerebral Registration with Sulcal Constraints.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

1997
Animal: Validation and Applications of Nonlinear Registration-Based Segmentation.
Int. J. Pattern Recognit. Artif. Intell., 1997

1996
Cortical Constraints for Non-Linear Cortical Registration.
Proceedings of the Visualization in Biomedical Computing, 4th International Conference, 1996

1995
Model-based 3-D segmentation of multiple sclerosis lesions in magnetic resonance brain images.
IEEE Trans. Medical Imaging, 1995

1994
Automated 3D nonlinear deformation procedure for determination of gross morphometric variability in human brain.
Proceedings of the Visualization in Biomedical Computing 1994, 1994

1992
Model-based 3-D segmentation of multiple sclerosis lesions in dual-echo MRI data.
Proceedings of the Visualization in Biomedical Computing '92, 1992

Toward frameless stereotaxy: anatomical-vascular correlation and registration.
Proceedings of the Visualization in Biomedical Computing '92, 1992

Model-based segmentation of individual brain structures from MRI data.
Proceedings of the Visualization in Biomedical Computing '92, 1992

1991
Reconstruction of 3-D Branching Structures.
Proceedings of the Information Processing in Medical Imaging, 1991


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