Curtis Huttenhower

According to our database, Curtis Huttenhower authored at least 37 papers between 2003 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper.

Alexander G. McFarland, Nolan W. Kennedy, Carolyn E. Mills, Danielle Tullman-Ercek, Curtis Huttenhower, Erica M. Hartmann

Bioinform., 2022

2021

Multivariable association discovery in population-scale meta-omics studies.

Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower

PLoS Comput. Biol., 2021

A statistical model for describing and simulating microbial community profiles.

Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma H. Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower

PLoS Comput. Biol., 2021

Statistical approaches for differential expression analysis in metatranscriptomics.

Yancong Zhang, Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa

Bioinform., 2021

2018

bioBakery: a meta'omic analysis environment.

Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa, Randall Schwager, Xochitl C. Morgan, Levi Waldron, Nicola Segata, Curtis Huttenhower

Bioinform., 2018

2017

A Bayesian method for detecting pairwise associations in compositional data.

Emma H. Schwager, Himel Mallick, Steffen Ventz, Curtis Huttenhower

PLoS Comput. Biol., 2017

A Workshop on Microbiomics, Metagenomics, and Metabolomics.

Soha Hassoun, Curtis Huttenhower

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer.

Daniela Börnigen, Svitlana Tyekucheva, Xiaodong Wang, Jennifer R. Rider, Gwo-Shu Lee, Lorelei A. Mucci, Christopher Sweeney, Curtis Huttenhower

PLoS Comput. Biol., 2016

2015

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

James Kaminski, Molly K. Gibson, Eric A. Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower

PLoS Comput. Biol., 2015

2014

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata

Nucleic Acids Res., 2014

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis.

Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Bioinform., 2014

Cross-study validation for the assessment of prediction algorithms.

Christoph Bernau, Markus Riester, Anne-Laure Boulesteix, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron, Lorenzo Trippa

Bioinform., 2014

2013

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.

Omry Koren, Dan Knight, Antonio González, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley

PLoS Comput. Biol., 2013

Inferring Developmental Stage Composition from Gene Expression in Human Malaria.

Regina Joice, Vagheesh Narasimhan, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti

PLoS Comput. Biol., 2013

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome.

Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Database J. Biol. Databases Curation, 2013

2012

Chapter 12: Human Microbiome Analysis.

Xochitl C. Morgan, Curtis Huttenhower

PLoS Comput. Biol., 2012

Bioinformatics for the Human Microbiome Project.

Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower

PLoS Comput. Biol., 2012

Microbial Co-occurrence Relationships in the Human Microbiome.

Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower

PLoS Comput. Biol., 2012

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.

Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower

PLoS Comput. Biol., 2012

2011

Optimized application of penalized regression methods to diverse genomic data.

Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica

Bioinform., 2011

2010

Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components.

Christopher Y. Park, David C. Hess, Curtis Huttenhower, Olga G. Troyanskaya

PLoS Comput. Biol., 2010

A Quick Guide to Large-Scale Genomic Data Mining.

Curtis Huttenhower, Oliver Hofmann

PLoS Comput. Biol., 2010

Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana.

Ana Pop, Curtis Huttenhower, Anjali Iyer-Pascuzzi, Philip N. Benfey, Olga G. Troyanskaya

BMC Syst. Biol., 2010

2009

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis.

Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya

PLoS Comput. Biol., 2009

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in <i>Caenorhabditis elegans</i>.

Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya

PLoS Comput. Biol., 2009

Predicting Cellular Growth from Gene Expression Signatures.

Edoardo M. Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A. Caudy, Maitreya J. Dunham, James R. Broach, David Botstein, Olga G. Troyanskaya

PLoS Comput. Biol., 2009

Graphle: Interactive exploration of large, dense graphs.

Curtis Huttenhower, Sajid O. Mehmood, Olga G. Troyanskaya

BMC Bioinform., 2009

Detailing regulatory networks through large scale data integration.

Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller

Bioinform., 2009

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.

Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya

Bioinform., 2009

2008

The Sleipnir library for computational functional genomics.

Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, Olga G. Troyanskaya

Bioinform., 2008

Assessing the functional structure of genomic data.

Curtis Huttenhower, Olga G. Troyanskaya

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.

Curtis Huttenhower, Avi I. Flamholz, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya, Hilary A. Coller

BMC Bioinform., 2007

Exploring the functional landscape of gene expression: directed search of large microarray compendia.

Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower, Kai Li, Olga G. Troyanskaya

Bioinform., 2007

2006

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.

Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya

BMC Bioinform., 2006

A scalable method for integration and functional analysis of multiple microarray datasets.

Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya

Bioinform., 2006

2005

A General Methodology for Integration of Microarray Data.

Curtis Huttenhower, Olga G. Troyanskaya

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2003

The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning.

Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme

Proceedings of The Twelfth Text REtrieval Conference, 2003