Colton J. Lloyd

According to our database, Colton J. Lloyd authored at least 9 papers between 2016 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.

Colton J. Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O. Palsson

PLoS Comput. Biol., 2021

2019

Expanding the Scope of Genome-scale Models of Metabolism and Gene Expression

Colton J. Lloyd

PhD thesis, 2019

The genetic basis for adaptation of model-designed syntrophic co-cultures.

Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O'Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist

PLoS Comput. Biol., 2019

Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen.

Joanne K. Liu, Colton J. Lloyd, Mahmoud M. Al-Bassam, Ali Ebrahim, Ji-Nu Kim, Connor A. Olson, Alexander Aksenov, Pieter C. Dorrestein, Karsten Zengler

PLoS Comput. Biol., 2019

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques

PLoS Comput. Biol., 2019

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.

Bin Du, Laurence Yang, Colton J. Lloyd, Xin Fang, Bernhard O. Palsson

PLoS Comput. Biol., 2019

DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.

Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson

BMC Syst. Biol., 2019

2018

COBRAme: A computational framework for genome-scale models of metabolism and gene expression.

Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson

PLoS Comput. Biol., 2018

2016

solveME: fast and reliable solution of nonlinear ME models.

Laurence Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson

BMC Bioinform., 2016