Colin N. Dewey

According to our database, Colin N. Dewey authored at least 15 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP).

Huishi Toh, Atefeh Bagheri, Colin N. Dewey, Ron M. Stewart, Lili Yan, Dennis Clegg, James A. Thomson, Peng Jiang

Comput. Biol. Chem., February, 2023

2017

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.

Matthew Bernstein, AnHai Doan, Colin N. Dewey

Bioinform., 2017

2015

Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.

Xin Zeng, Bo Li, Rene Welch, Constanza Rojo, Ye Zheng, Colin N. Dewey, Sündüz Keles

PLoS Comput. Biol., 2015

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.

Ning Leng, Yuan Li, Brian E. McIntosh, Bao Kim Nguyen, Bret Duffin, Shulan Tian, James A. Thomson, Colin N. Dewey, Ron M. Stewart, Christina Kendziorski

Bioinform., 2015

2013

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema.

Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey

PLoS Comput. Biol., 2013

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.

Laura H. LeGault, Colin N. Dewey

Bioinform., 2013

2011

Sequence Surveyor: Leveraging Overview for Scalable Genomic Alignment Visualization.

Danielle Albers, Colin N. Dewey, Michael Gleicher

IEEE Trans. Vis. Comput. Graph., 2011

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.

Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles

PLoS Comput. Biol., 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Bo Li, Colin N. Dewey

BMC Bioinform., 2011

Positional orthology: putting genomic evolutionary relationships into context.

Colin N. Dewey

Briefings Bioinform., 2011

2010

RNA-Seq gene expression estimation with read mapping uncertainty.

Bo Li, Victor Ruotti, Ron M. Stewart, James A. Thomson, Colin N. Dewey

Bioinform., 2010

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis.

Bret R. Larget, Satish K. Kotha, Colin N. Dewey, Cécile Ané

Bioinform., 2010

2009

Fast Statistical Alignment.

Robert K. Bradley, Adam Roberts, Michael E. Smoot, Sudeep Juvekar, Jaeyoung Do, Colin N. Dewey, Ian H. Holmes, Lior Pachter

PLoS Comput. Biol., 2009

Reconstructing latent periods in genome sequences with insertions and deletions.

Raman Arora, Colin N. Dewey, William A. Sethares

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2006

Parametric Alignment of <i>Drosophila</i> Genomes.

Colin N. Dewey, Peter Huggins, Kevin Woods, Bernd Sturmfels, Lior Pachter

PLoS Comput. Biol., 2006