Clifford A. Meyer

According to our database, Clifford A. Meyer authored at least 15 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.

Sehi L'Yi, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown, Clifford A. Meyer, Nils Gehlenborg

Bioinform., February, 2023

2020

Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data.

Rongbin Zheng, Xin Dong, Changxin Wan, Xiaoying Shi, Xiaoyan Zhang, Clifford A. Meyer

Quant. Biol., 2020

2019

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu

Nucleic Acids Res., 2019

Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.

Shaojuan Li, Changxin Wan, Rongbin Zheng, Jingyu Fan, Xin Dong, Clifford A. Meyer, Xiaole Shirley Liu

Nucleic Acids Res., 2019

2018

Improved design and analysis of CRISPR knockout screens.

Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang, Clifford A. Meyer, Wei Li, Myles Brown, Xiaole Shirley Liu

Bioinform., 2018

2017

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu

Nucleic Acids Res., 2017

2016

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long

BMC Bioinform., 2016

2012

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang

Bioinform., 2012

2011

CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.

Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu

Nucleic Acids Res., 2011

BINOCh: binding inference from nucleosome occupancy changes.

Clifford A. Meyer, Housheng H. He, Myles Brown, Xiaole Shirley Liu

Bioinform., 2011

2005

Convex envelopes for edge-concave functions.

Clifford A. Meyer, Christodoulos A. Floudas

Math. Program., 2005

Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimators.

Clifford A. Meyer, Christodoulos A. Floudas

J. Glob. Optim., 2005

Global optimization in the 21st century: Advances and challenges.

Christodoulos A. Floudas, Ioannis G. Akrotirianakis, S. Caratzoulas, Clifford A. Meyer, Josef Kallrath

Comput. Chem. Eng., 2005

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Wei Li, Clifford A. Meyer, Xiaole Shirley Liu

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

Trilinear Monomials with Mixed Sign Domains: Facets of the Convex and Concave Envelopes.

Clifford A. Meyer, Christodoulos A. Floudas

J. Glob. Optim., 2004