Clément Jonquet

Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

2021

French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2021

FAIR or FAIRer? An Integrated Quantitative FAIRness Assessment Grid for Semantic Resources and Ontologies.

[BibT_eX]

[DOI]

Emna Amdouni

Proceedings of the Metadata and Semantic Research - 15th International Conference, 2021

Crop Planning and Production Process Ontology (C3PO), a New Model to Assist Diversified Crop Production.

[BibT_eX]

[DOI]

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

Description sémantique des stades de développement phénologique des plantes cas d'étude de la vigne.

[BibT_eX]

[DOI]

Proceedings of the IC 2021 : 32es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 32nd French Knowledge Engineering Conference), Bordeaux, France, June 30, 2021

L'ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France.

[BibT_eX]

[DOI]

Syphax Bouazzouni

Proceedings of the IC 2021 : 32es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 32nd French Knowledge Engineering Conference), Bordeaux, France, June 30, 2021

Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal.

[BibT_eX]

[DOI]

Emna Amdouni

Proceedings of the IC 2021 : 32es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 32nd French Knowledge Engineering Conference), Bordeaux, France, June 30, 2021

2020

39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition.

[BibT_eX]

[DOI]

Data Sci. J., 2020

FAIRness Literacy: The Achilles' Heel of Applying FAIR Principles.

[BibT_eX]

[DOI]

Data Sci. J., 2020

Results of the Ontology Alignment Evaluation Initiative 2020.

[BibT_eX]

[DOI]

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

Semantic Description of Plant Phenological Development Stages, Starting with Grapevine.

[BibT_eX]

[DOI]

Proceedings of the Metadata and Semantic Research - 14th International Conference, 2020

Investigating One Million XRefs in Thirthy Ontologies from the OBO World.

[BibT_eX]

[DOI]

Amir Laadhar

Élcio Abrahão

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

Analysis of Term Reuse, Term Overlap and Extracted Mappings Across AgroPortal Semantic Resources.

[BibT_eX]

[DOI]

Amir Laadhar

Élcio Abrahão

Proceedings of the Knowledge Engineering and Knowledge Management, 2020

2019

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

Recent progresses in data and knowledge integration for decision support in agri-food chains.

[BibT_eX]

[DOI]

Proceedings of the IC 2019: 30es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 30th French Knowledge Engineering Conference), 2019

Ontology Repository and Ontology-Based Services - Challenges, contributions and applications to biomedicine & agronomy. (Portail d'ontologies et service à base d'ontologies - Défis, contributions et applications à la biomédecine et à l'agronomie).

[BibT_eX]

[DOI]

, 2019

2018

Building an effective and efficient background knowledge resource to enhance ontology matching.

[BibT_eX]

[DOI]

J. Web Semant., 2018

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal.

[BibT_eX]

[DOI]

J. Data Semant., 2018

A novel framework for biomedical entity sense induction.

[BibT_eX]

[DOI]

Esther Dzalé Yeumo Kaboré

J. Biomed. Informatics, 2018

ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph.

[BibT_eX]

[DOI]

Int. J. Knowl. Learn., 2018

AgroPortal: A vocabulary and ontology repository for agronomy.

[BibT_eX]

[DOI]

Vincent Emonet

John Graybeal

Marie-Angélique Laporte

Valeria Pesce

Pierre Larmande

Comput. Electron. Agric., 2018

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+.

[BibT_eX]

[DOI]

Jitendra Jonnagaddala

Bioinform., 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

[BibT_eX]

[DOI]

Lisa C. Harper

Jacqueline D. Campbell

Ethalinda K. S. Cannon

Marie-Angélique Laporte

Christopher J. Mungall

Monica C. Munoz-Torres

Sabarinath Subramaniam

Marcela Karey Tello-Ruiz

Database J. Biol. Databases Curation, 2018

Projet VisaTM : l'interconnexion OpenMinTeD - AgroPortal - ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français.

[BibT_eX]

[DOI]

Proceedings of the IC 2018 : 29es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 29th French Knowledge Engineering Conference), 2018

2017

PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units.

[BibT_eX]

[DOI]

PeerJ Prepr., 2017

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.

[BibT_eX]

[DOI]

Marcos Martínez Romero

J. Biomed. Semant., 2017

Challenges for Ontology Repositories and Applications to Biomedicine & Agronomy.

[BibT_eX]

[DOI]

Proceedings of the 4th Annual International Symposium on Information Management and Big Data, 2017

YAM-BIO: results for OAEI 2017.

[BibT_eX]

[DOI]

Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017

New Generation Metadata Vocabulary for Ontology Description and Publication.

[BibT_eX]

[DOI]

Proceedings of the Metadata and Semantic Research - 11th International Conference, 2017

ViewpointS: When Social Ranking Meets the Semantic Web.

[BibT_eX]

[DOI]

Philippe Lemoisson

Guillaume Surroca

Stefano Alessandro Cerri

Proceedings of the Thirtieth International Florida Artificial Intelligence Research Society Conference, 2017

ICD10 Coding of Death Certificates with the NCBO and SIFR Annotator(s) at CLEF eHealth 2017 Task 1.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2017, 2017

2016

Biomedical term extraction: overview and a new methodology.

[BibT_eX]

[DOI]

Inf. Retr. J., 2016

Subjective and generic distance in ViewpointS: an experiment on WordNet.

[BibT_eX]

[DOI]

Proceedings of the 6th International Conference on Web Intelligence, Mining and Semantics, 2016

Multilingual Mapping Reconciliation between English-French Biomedical Ontologies.

[BibT_eX]

[DOI]

Proceedings of the 6th International Conference on Web Intelligence, Mining and Semantics, 2016

MuEVo, a Breast Cancer Consumer Health Vocabulary Built Out of Web Forums.

[BibT_eX]

[DOI]

Solène Eholié

Mike Donald Tapi-Nzali

Sandra Bringay

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Automatic Biomedical Term Polysemy Detection.

[BibT_eX]

[DOI]

Esther Dzalé Yeumo Kaboré

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal.

[BibT_eX]

[DOI]

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Réconciliation d'alignements multi-lingues dans BioPortal.

[BibT_eX]

[DOI]

Proceedings of the IC 2016 : 27es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 27th French Knowledge Engineering Conference), 2016

Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching.

[BibT_eX]

[DOI]

Proceedings of the Knowledge Engineering and Knowledge Management, 2016

A Way to Automatically Enrich Biomedical Ontologies.

[BibT_eX]

[DOI]

Proceedings of the 19th International Conference on Extending Database Technology, 2016

2015

Preference Dissemination by Sharing Viewpoints.

[BibT_eX]

[DOI]

Proceedings of the KEOD 2015, 2015

Diffusion de systèmes de préférence par confrontation de points de vue, vers une simulation de la Sérendipité.

[BibT_eX]

[DOI]

Proceedings of the IC 2015 : 26es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 26th French Knowledge Engineering Conference), 2015

Roadmap for a Multilingual BioPortal.

[BibT_eX]

[DOI]

Vincent Emonet

Proceedings of the Fourth Workshop on the Multilingual Semantic Web (MSW4) co-located with 12th Extended Semantic Web Conference (ESWC 2015), 2015

Prédiction de la polysémie pour un terme biomédical.

[BibT_eX]

[DOI]

Proceedings of the CORIA 2015 - Conférence en Recherche d'Infomations et Applications, 2015

2014

Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus.

[BibT_eX]

[DOI]

Int. J. Knowl. Discov. Bioinform., 2014

Automatic Term Extraction Combining Different Information (Extraction automatique de termes combinant différentes informations) [in French].

[BibT_eX]

[DOI]

Proceedings of the Traitement Automatique des Langues Naturelles, 2014

Yet Another Ranking Function for Automatic Multiword Term Extraction.

[BibT_eX]

[DOI]

Proceedings of the Advances in Natural Language Processing, 2014

Representing NCBO Annotator Results in Standard RDF with the Annotation Ontology.

[BibT_eX]

[DOI]

Soumia Melzi

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Scoring Semantic Annotations Returned by The NCBO Annotator.

[BibT_eX]

[DOI]

Soumia Melzi

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

SIFR Project: The Semantic Indexing of French Biomedical Data Resources.

[BibT_eX]

[DOI]

Proceedings of the 1st Symposium on Information Management and Big Data, 2014

BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation.

[BibT_eX]

[DOI]

Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

An Approach to Compare Bio-Ontologies Portals.

[BibT_eX]

[DOI]

Stéfan Jacques Darmoni

Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal ?

[BibT_eX]

[DOI]

Stéfan Jacques Darmoni

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

Integration of linguistic and web information to improve biomedical terminology extraction.

[BibT_eX]

[DOI]

Proceedings of the 18th International Database Engineering & Applications Symposium, 2014

Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique.

[BibT_eX]

[DOI]

Proceedings of the IC 2014 : 25es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 25th French Knowledge Engineering Conference), 2014

2011

NCBO Resource Index: Ontology-based search and mining of biomedical resources.

[BibT_eX]

[DOI]

J. Web Semant., 2011

Negotiating the web science curriculum through shared educational artefacts.

[BibT_eX]

[DOI]

Proceedings of the Web Science 2011, 2011

The NCBO Annotator: Ontology-Based Annotation as a Web Service.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Building a biomedical ontology recommender web service.

[BibT_eX]

[DOI]

Nigam H. Shah

J. Biomed. Semant., 2010

A UIMA wrapper for the NCBO annotator.

[BibT_eX]

[DOI]

Christophe Roeder

William A. Baumgartner Jr.

Nigam H. Shah

Karin Verspoor

Lawrence Hunter

Bioinform., 2010

Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2010 - 9th International Semantic Web Conference, 2010

Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical.

[BibT_eX]

Proceedings of the IC 2010 : 21es Journées Ingénierie des Connaissances 2010 (Proceedings of the 21st French Knowledge Engineering Conference), 2010

2009

BioPortal: ontologies and integrated data resources at the click of a mouse.

[BibT_eX]

[DOI]

Margaret-Anne D. Storey

Christopher G. Chute

Nucleic Acids Res., 2009

Ontology-driven indexing of public datasets for translational bioinformatics.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Comparison of concept recognizers for building the Open Biomedical Annotator.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

What Four Million Mappings Can Tell You about Two Hundred Ontologies.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2009, 8th International Semantic Web Conference, 2009

2008

Agent-Grid Integration Language.

[BibT_eX]

[DOI]

Pascal Dugenie

Multiagent Grid Syst., 2008

Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication

[BibT_eX]

[DOI]

CoRR, 2008

Service-Based Integration of Grid and Multi-Agent Systems Models.

[BibT_eX]

[DOI]

Pascal Dugenie

Proceedings of the Service-Oriented Computing: Agents, 2008

BioPortal: A Web Repository for Biomedical Ontologies and Data Resources.

[BibT_eX]

[DOI]

Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), 2008

The Principle of Immanence in GRID-Multiagent Integrated Systems.

[BibT_eX]

[DOI]

Pascal Dugenie

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2008 Workshops, 2008

A System for Ontology-Based Annotation of Biomedical Data.

[BibT_eX]

[DOI]

Nigam Shah

Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

2006

Dynamic Service Generation: Agent interactions for service exchange on the Grid. (Génération dynamique de service : Interactions entre agents pour l'échange de service Grid).

[BibT_eX]

[DOI]