Clemens Wrzodek

According to our database, Clemens Wrzodek authored at least 14 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Prediction of polyspecificity from antibody sequence data by machine learning.

Szabolcs Elias, Clemens Wrzodek, Charlotte M. Deane, Alain C. Tissot, Stefan Klostermann, Francesca Ros

Frontiers Bioinform., May, 2023

2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.

Nicolas Rodriguez, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag, Jakob Matthes, Jan Rudolph, Finja Wrzodek, Eugen Netz, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek, Sebastian Fröhlich, Nathan E. Lewis, Chris J. Myers, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka, Andreas Dräger

Bioinform., 2015

2013

Inference and integration of biochemical networks with multilayered omics data.

Clemens Wrzodek

PhD thesis, 2013

Precise generation of systems biology models from KEGG pathways.

Clemens Wrzodek, Finja Büchel, Manuel Ruff, Andreas Dräger, Andreas Zell

BMC Syst. Biol., 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.

Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère

BMC Syst. Biol., 2013

InCroMAP: integrated analysis of cross-platform microarray and pathway data.

Clemens Wrzodek, Johannes Eichner, Finja Büchel, Andreas Zell

Bioinform., 2013

2012

Pathway-based visualization of cross-platform microarray datasets.

Clemens Wrzodek, Johannes Eichner, Andreas Zell

Bioinform., 2012

Qualitative translation of relations from BioPAX to SBML qual.

Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez, Nicolas Le Novère, Andreas Zell

Bioinform., 2012

2011

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats.

Clemens Wrzodek, Andreas Dräger, Andreas Zell

Bioinform., 2011

Inferring statin-induced gene regulatory relationships in primary human hepatocytes.

Adrian Schröder, Johannes Wollnik, Clemens Wrzodek, Andreas Dräger, Michael Bonin, Oliver Burk, Maria Thomas, Wolfgang E. Thasler, Ulrich M. Zanger, Andreas Zell

Bioinform., 2011

JSBML: a flexible Java library for working with SBML.

Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka

Bioinform., 2011

Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization.

Adrian Schröder, Clemens Wrzodek, Johannes Wollnik, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, Andreas Zell

Proceedings of the IEEE Congress on Evolutionary Computation, 2011

2010

ModuleMaster: A new tool to decipher transcriptional regulatory networks.

Clemens Wrzodek, Adrian Schröder, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, Marcel Kronfeld, Klaus Harter, Andreas Zell

Biosyst., 2010

2006

Cerco: Supporting Range Queries with a Hierarchically Structured Peer-to-Peer System.

Simon Rieche, Klaus Wehrle, Leo Petrak, Clemens Wrzodek

Proceedings of the LCN 2006, 2006