Claus O. Wilke

According to our database, Claus O. Wilke authored at least 25 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches.

Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington

Patterns, December, 2023

Mining Patents with Large Language Models Demonstrates Congruence of Functional Labels and Chemical Structures.

Clayton W. Kosonocky, Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington

CoRR, 2023

Prompt Engineering for Transformer-based Chemical Similarity Search Identifies Structurally Distinct Functional Analogues.

Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington

CoRR, 2023

2021

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets.

Alexis Hill, James Rybarski, Kuang Hu, Ilya Finkelstein, Claus O. Wilke

J. Open Source Softw., 2021

2020

colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes.

Achim Zeileis, Jason C. Fisher, Kurt Hornik, Ross Ihaka, Claire D. McWhite, Paul Murrell, Reto Stauffer, Claus O. Wilke

J. Stat. Softw., 2020

2019

Welcome to the Tidyverse.

Hadley Wickham, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D'Agostino McGowan, Romain François, Garrett Grolemund, Alex Hayes, Lionel Henry, Jim Hester, Max Kuhn, Thomas Lin Pedersen, Evan Miller, Stephan Bache, Kirill Müller, Jeroen Ooms, David Robinson, Dana Paige Seidel, Vitalie Spinu, Kohske Takahashi, Davis Vaughan, Claus O. Wilke, Kara H. Woo, Hiroaki Yutani

J. Open Source Softw., 2019

Phylogenetic Weighting Does Little to Improve the Accuracy of Evolutionary Coupling Analyses.

Adam J. Hockenberry, Claus O. Wilke

Entropy, 2019

Pinetree: a step-wise gene expression simulator with codon-specific translation rates.

Benjamin R. Jack, Claus O. Wilke

Bioinform., 2019

2015

Controlled Measurement and Comparative Analysis of Cellular Components in <i>E</i>. <i>coli</i> Reveals Broad Regulatory Changes in Response to Glucose Starvation.

John R. Houser, Craig Barnhart, Daniel R. Boutz, Sean M. Carroll, Aurko Dasgupta, Joshua K. Michener, Brittany D. Needham, Ophelia Papoulas, Viswanadham Sridhara, Dariya K. Sydykova, Christopher J. Marx, M. Stephen Trent, Jeffrey E. Barrick, Edward M. Marcotte, Claus O. Wilke

PLoS Comput. Biol., 2015

2012

Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation.

Daifeng Wang, Mia K. Markey, Claus O. Wilke, Ari Arapostathis

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Bringing Molecules Back into Molecular Evolution.

Claus O. Wilke

PLoS Comput. Biol., 2012

What does sex have to do with it: tracking the fate of deleterious mutations in sexual populations.

Arthur W. Covert III, Jared Carlson-Stevermer, Dakota Z. Derrberry, Claus O. Wilke

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

The role of deleterious mutations in the adaptation to a novel environment.

Arthur W. Covert III, Jared Carlson-Stevermer, Dakota Z. Derrberry, Claus O. Wilke

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

2010

Does Mutational Robustness Inhibit Extinction by Lethal Mutagenesis in Viral Populations?

Eamon B. O'Dea, Thomas E. Keller, Claus O. Wilke

PLoS Comput. Biol., 2010

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes.

Wanjun Gu, Tong Zhou, Claus O. Wilke

PLoS Comput. Biol., 2010

2004

Avida: A Software Platform for Research in Computational Evolutionary Biology.

Charles Ofria, Claus O. Wilke

Artif. Life, 2004

Digital Evolution in Time-Dependent Fitness Landscapes.

Ye Li, Claus O. Wilke

Artif. Life, 2004

Evolution of Resource Competition between Mutually Dependent Digital Organisms.

Tyler J. Johnson, Claus O. Wilke

Artif. Life, 2004

Experiments in Digital Evolution (Editors' Introduction to the Special Issue).

Christoph Adami, Claus O. Wilke

Artif. Life, 2004

2003

Viral evolution under the pressure of an adaptive immune system: Optimal mutation rates for viral escape.

Christel Kamp, Claus O. Wilke, Christoph Adami, Stefan Bornholdt

Complex., 2003

Does the Red Queen Reign in the Kingdom of Digital Organisms?

Claus O. Wilke

Proceedings of the Advances in Artificial Life, 7th European Conference, 2003

2001

Adaptive evolution on neutral networks

Claus O. Wilke

CoRR, 2001

2000

Dynamische Fitnesslandschaften.

Claus O. Wilke

Künstliche Intell., 2000

1999

Genetic Algorithms in Time-Dependent Environments

Christopher Ronnewinkel, Claus O. Wilke, Thomas Martinetz

CoRR, 1999

Molecular Evolution in Time-Dependent Environments.

Claus O. Wilke, Christopher Ronnewinkel, Thomas Martinetz

Proceedings of the Advances in Artificial Life, 5th European Conference, 1999