Claudine Chaouiya
Orcid: 0000-0003-2350-0756
According to our database1,
Claudine Chaouiya
authored at least 48 papers
between 2003 and 2024.
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Bibliography
2024
Proceedings of the Cellular Automata and Discrete Complex Systems, 2024
2023
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis.
Nucleic Acids Res., January, 2023
2022
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting.
Bioinform., October, 2022
Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>.
Briefings Bioinform., 2022
2021
Bioinform., 2021
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinform., 2021
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021
2019
Local Negative Circuits and Cyclic Attractors in Boolean Networks with at most Five Components.
SIAM J. Appl. Dyn. Syst., 2019
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019
2018
F1000Research, 2018
Proceedings of SASB 2018, 2018
2016
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016
Primary sex determination of placental mammals: a modelling study uncovers dynamical developmental constraints in the formation of Sertoli and granulosa cells.
BMC Syst. Biol., 2016
2015
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
J. Integr. Bioinform., 2015
Bioinform., 2015
2014
A Discrete Model of <i>Drosophila</i> Eggshell Patterning Reveals Cell-Autonomous and Juxtacrine Effects.
PLoS Comput. Biol., 2014
Proceedings of the 12th International Workshop on Discrete Event Systems, 2014
2013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol., 2013
Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Syst. Biol., 2013
Composition and abstraction of logical regulatory modules: application to multicellular systems.
Bioinform., 2013
2012
Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012
Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data.
Proceedings of the Information Processign in Cells and Tissues, 2012
Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control.
Proceedings of the Computational Methods in Systems Biology, 2012
2011
Theor. Comput. Sci., 2011
Nat. Comput., 2011
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011
2010
Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.
PLoS Comput. Biol., 2010
Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010
Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties.
Proceedings of the IEEE International Conference on Control Applications, 2010
2009
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance.
BMC Syst. Biol., 2009
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009
2008
Logical modelling of the role of the Hh pathway in the patterning of the <i>Drosophila</i> wing disc.
Proceedings of the ECCB'08 Proceedings, 2008
2007
Tech. Sci. Informatiques, 2007
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2007
2006
From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits.
Trans. Comp. Sys. Biology, 2006
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in <i>E.Coli</i>.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
2004
Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets.
Proceedings of the Applications and Theory of Petri Nets 2004, 2004
2003
Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework.
Proceedings of the Positive Systems, 2003
A description of dynamical graphs associated to elementary regulatory circuits.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003