Claudia Andreini

According to our database, Claudia Andreini authored at least 15 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Hunting down zinc(II)-binding sites in proteins with distance matrices.

Vincenzo Laveglia, Milana Bazayeva, Claudia Andreini, Antonio Rosato

Bioinform., October, 2023

2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network.

Vincenzo Laveglia, Andrea Giachetti, Davide Sala, Claudia Andreini, Antonio Rosato

J. Chem. Inf. Model., 2022

2019

Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands.

Marina Macchiagodena, Marco Pagliai, Claudia Andreini, Antonio Rosato, Piero Procacci

J. Chem. Inf. Model., 2019

2018

MetalPDB in 2018: a database of metal sites in biological macromolecular structures.

Valeria Putignano, Antonio Rosato, Lucia Banci, Claudia Andreini

Nucleic Acids Res., 2018

2016

MetalPredator: a web server to predict iron-sulfur cluster binding proteomes.

Yana Valasatava, Antonio Rosato, Lucia Banci, Claudia Andreini

Bioinform., 2016

2013

MetalPDB: a database of metal sites in biological macromolecular structures.

Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini, Antonio Rosato

Nucleic Acids Res., 2013

MetalS²: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids.

Claudia Andreini, Gabriele Cavallaro, Antonio Rosato, Yana Valasatava

J. Chem. Inf. Model., 2013

2012

MACiE: exploring the diversity of biochemical reactions.

Gemma L. Holliday, Claudia Andreini, Julia D. Fischer, Syed Asad Rahman, Daniel E. Almonacid, Sophie T. Williams, William R. Pearson

Nucleic Acids Res., 2012

FindGeo: a tool for determining metal coordination geometry.

Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini

Bioinform., 2012

2011

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms.

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Leonardo Decaria, Antonio Rosato

J. Chem. Inf. Model., 2011

2009

Metal-MACiE: a database of metals involved in biological catalysis.

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Gemma L. Holliday, Janet M. Thornton

Bioinform., 2009

2007

Predicting zinc binding at the proteome level.

Andrea Passerini, Claudia Andreini, Sauro Menchetti, Antonio Rosato, Paolo Frasconi

BMC Bioinform., 2007

2006

Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence.

Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato

Proceedings of the Research in Computational Molecular Biology, 2006

2004

A hint to search for metalloproteins in gene banks.

Claudia Andreini, Ivano Bertini, Antonio Rosato

Bioinform., 2004