Chunquan Li

According to our database, Chunquan Li authored at least 27 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Uncertainty-driven and Adversarial Calibration Learning for Epicardial Adipose Tissue Segmentation.

Kai Zhao, Zhiming Liu, Jiaqi Liu, Jingbiao Zhou, Bihong Liao, Huifang Tang, Qiuyu Wang, Chunquan Li

CoRR, 2024

ChiMamba: Predicting Chromatin Interactions Based on Mamba.

Jianing Zhang, Chao Song, Ting Cui, Chunquan Li, Jiquan Ma

Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

2023

SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse.

Fengcui Qian, Li-Wei Zhou, Yanyu Li, Zhengmin Yu, Li-Dong Li, Yuezhu Wang, Mingcong Xu, Qiuyu Wang, Chunquan Li

Nucleic Acids Res., July, 2023

CRdb: a comprehensive resource for deciphering chromatin regulators in human.

Yimeng Zhang, Yuexin Zhang, Chao Song, Xilong Zhao, Bo Ai, Yuezhu Wang, Liwei Zhou, Jiang Zhu, Chenchen Feng, Liyan Xu, Qiuyu Wang, Hong Sun, Qiaoli Fang, Xiaozheng Xu, Enmin Li, Chunquan Li

Nucleic Acids Res., January, 2023

SEdb 2.0: a comprehensive super-enhancer database of human and mouse.

Yuezhu Wang, Chao Song, Jun Zhao, Yuexin Zhang, Xilong Zhao, Chenchen Feng, Guorui Zhang, Jiang Zhu, Fan Wang, Fengcui Qian, Liwei Zhou, Jian Zhang, Xuefeng Bai, Bo Ai, Xinyu Liu, Qiuyu Wang, Chunquan Li

Nucleic Acids Res., January, 2023

CanMethdb: a database for genome-wide DNA methylation annotation in cancers.

Jianmei Zhao, Fengcui Qian, Xuecang Li, Zhengmin Yu, Jiang Zhu, Rui Yu, Yue Zhao, Ke Ding, Yanyu Li, Yongsan Yang, Qi Pan, Jiaxin Chen, Chao Song, Qiuyu Wang, Jian Zhang, Guohua Wang, Chunquan Li

Bioinform., January, 2023

SENIES: DNA Shape Enhanced Two-Layer Deep Learning Predictor for the Identification of Enhancers and Their Strength.

Ye Li, Fanhui Kong, Hui Cui, Fan Wang, Chunquan Li, Jiquan Ma

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

MGCT: Mutual-Guided Cross-Modality Transformer for Survival Outcome Prediction using Integrative Histopathology-Genomic Features.

Mingxin Liu, Yunzan Liu, Hui Cui, Chunquan Li, Jiquan Ma

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse.

Yuexin Zhang, Chao Song, Yimeng Zhang, Yuezhu Wang, Chenchen Feng, Jiaxin Chen, Ling Wei, Qi Pan, Desi Shang, Yanbing Zhu, Jiang Zhu, Shuangsang Fang, Jun Zhao, Yongsan Yang, Xilong Zhao, Xiaozheng Xu, Qiuyu Wang, Jincheng Guo, Chunquan Li

Nucleic Acids Res., 2022

GREAP: a comprehensive enrichment analysis software for human genomic regions.

Yongsan Yang, Fengcui Qian, Xuecang Li, Yanyu Li, Liwei Zhou, Qiuyu Wang, Xinyuan Zhou, Jian Zhang, Chao Song, Zhengmin Yu, Ting Cui, Chenchen Feng, Jiang Zhu, Desi Shang, Jiaqi Liu, Mengfei Sun, Yuexin Zhang, Huifang Tang, Chunquan Li

Briefings Bioinform., 2022

2021

ATACdb: a comprehensive human chromatin accessibility database.

Fan Wang, Xuefeng Bai, Yuezhu Wang, Yong Jiang, Bo Ai, Yong Zhang, Yuejuan Liu, Mingcong Xu, Qiuyu Wang, Xiaole Han, Qi Pan, Yanyu Li, Xuecang Li, Jian Zhang, Jun Zhao, Guorui Zhang, Chenchen Feng, Jiang Zhu, Chunquan Li

Nucleic Acids Res., 2021

VARAdb: a comprehensive variation annotation database for human.

Qi Pan, Yuejuan Liu, Xuefeng Bai, Xiaole Han, Yong Jiang, Bo Ai, Shanshan Shi, Fan Wang, Mingcong Xu, Yuezhu Wang, Jun Zhao, Jiaxin Chen, Jian Zhang, Xuecang Li, Jiang Zhu, Guorui Zhang, Qiuyu Wang, Chunquan Li

Nucleic Acids Res., 2021

LncSEA: a platform for long non-coding RNA related sets and enrichment analysis.

Jiaxin Chen, Jian Zhang, Yu Gao, Yanyu Li, Chenchen Feng, Chao Song, Ziyu Ning, Xinyuan Zhou, Jianmei Zhao, Minghong Feng, Yuexin Zhang, Ling Wei, Qi Pan, Yong Jiang, Fengcui Qian, Junwei Han, Yongsan Yang, Qiuyu Wang, Chunquan Li

Nucleic Acids Res., 2021

TRlnc: a comprehensive database for human transcriptional regulatory information of lncRNAs.

Yanyu Li, Xuecang Li, Yongsan Yang, Meng Li, Fengcui Qian, Zhidong Tang, Jianmei Zhao, Jian Zhang, Xuefeng Bai, Yong Jiang, Jianyuan Zhou, Yuexin Zhang, Liwei Zhou, Jianjun Xie, Enmin Li, Qiuyu Wang, Chunquan Li

Briefings Bioinform., 2021

ComPAT: A Comprehensive Pathway Analysis Tools.

Xiaojie Su, Chao Song, Chenchen Feng, Yu Gao, Ziyu Ning, Qiuyu Wang, Jiaxin Chen, Yuexin Zhang, Ling Wei, Xinyuan Zhou, Chunquan Li

Proceedings of the Intelligent Computing Theories and Application, 2021

2020

KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors.

Chenchen Feng, Chao Song, Yuejuan Liu, Fengcui Qian, Yu Gao, Ziyu Ning, Qiuyu Wang, Yong Jiang, Yanyu Li, Meng Li, Jiaxin Chen, Jian Zhang, Chunquan Li

Nucleic Acids Res., 2020

ENdb: a manually curated database of experimentally supported enhancers for human and mouse.

Xuefeng Bai, Shanshan Shi, Bo Ai, Yong Jiang, Yuejuan Liu, Xiaole Han, Mingcong Xu, Qi Pan, Fan Wang, Qiuyu Wang, Jian Zhang, Xuecang Li, Chenchen Feng, Yanyu Li, Yuezhu Wang, Yiwei Song, Ke Feng, Chunquan Li

Nucleic Acids Res., 2020

HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures.

Meng Li, Jianmei Zhao, Xuecang Li, Yang Chen, Chenchen Feng, Fengcui Qian, Yuejuan Liu, Jian Zhang, Jianzhong He, Bo Ai, Ziyu Ning, Wei Liu, Xuefeng Bai, Xiaole Han, Zhiyong Wu, Xiue Xu, Zhidong Tang, Qi Pan, Liyan Xu, Chunquan Li, Qiuyu Wang, Enmin Li

Briefings Bioinform., 2020

2019

SEanalysis: a web tool for super-enhancer associated regulatory analysis.

Fengcui Qian, Xuecang Li, Jincheng Guo, Jianmei Zhao, Yanyu Li, Zhidong Tang, Liwei Zhou, Jian Zhang, Xuefeng Bai, Yong Jiang, Qi Pan, Qiuyu Wang, Enmin Li, Chunquan Li, Liyan Xu, Dechen Lin

Nucleic Acids Res., 2019

SEdb: a comprehensive human super-enhancer database.

Yong Jiang, Fengcui Qian, Xuefeng Bai, Yuejuan Liu, Qiuyu Wang, Bo Ai, Xiaole Han, Shanshan Shi, Jian Zhang, Xuecang Li, Zhidong Tang, Qi Pan, Yuezhu Wang, Fan Wang, Chunquan Li

Nucleic Acids Res., 2019

TRCirc: a resource for transcriptional regulation information of circRNAs.

Zhidong Tang, Xuecang Li, Jianmei Zhao, Fengcui Qian, Chenchen Feng, Yanyu Li, Jian Zhang, Yong Jiang, Yongsan Yang, Qiuyu Wang, Chunquan Li

Briefings Bioinform., 2019

2015

Characterizing and optimizing human anticancer drug targets based on topological properties in the context of biological pathways.

Jian Zhang, Yan Wang, Desi Shang, Fulong Yu, Wei Liu, Yan Zhang, Chenchen Feng, Qiuyu Wang, Yanjun Xu, Yuejuan Liu, Xuefeng Bai, Xuecang Li, Chunquan Li

J. Biomed. Informatics, 2015

2014

The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure.

Jing Li, Chunquan Li, Junwei Han, Chunlong Zhang, Desi Shang, Qianlan Yao, Yunpeng Zhang, Yanjun Xu, Wei Liu, Meng Zhou, Haixiu Yang, Fei Su, Xia Li

J. Biomed. Informatics, 2014

2013

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.

Hongbo Shi, Juan Xu, Guangde Zhang, Liangde Xu, Chunquan Li, Li Wang, Zheng Zhao, Wei Jiang, Zheng Guo, Xia Li

BMC Syst. Biol., 2013

Topologically inferring risk-active pathways toward precise cancer classification by directed random walk.

Wei Liu, Chunquan Li, Yanjun Xu, Haixiu Yang, Qianlan Yao, Junwei Han, Desi Shang, Chunlong Zhang, Fei Su, Xiaoxi Li, Yun Xiao, Fan Zhang, Meng Dai, Xia Li

Bioinform., 2013

2011

DOSim: An R package for similarity between diseases based on Disease Ontology.

Jiang Li, Bingsheng Gong, Xi Chen, Tao Liu, Chao Wu, Fan Zhang, Chunquan Li, Xiang Li, Shaoqi Rao, Xia Li

BMC Bioinform., 2011

2007

A Heuristic Approach for Target SNP Mining Based on Genome-Wide IBD Profile.

Fan Zhang, Xia Li, Ivan Viktorovich Krivosheev, Binsheng Gong, Lei Du, Chunquan Li

Proceedings of the Third International Conference on Natural Computation, 2007