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Chunfang Zheng

Orcid: 0000-0003-4205-4501

According to our database¹, Chunfang Zheng authored at least 50 papers between 2005 and 2021.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of three.

Timeline

Legend:

Book

In proceedings

Article

PhD thesis

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Links

On csauthors.net:

Bibliography

2021

Branching Out to Speciation in a Model of Fractionation: The Malvaceae.

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IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences.

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James H. Leebens-Mack

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J. Comput. Biol., 2021

The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny.

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James H. Leebens-Mack

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J. Bioinform. Comput. Biol., 2021

2020

RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences.

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James H. Leebens-Mack

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Proceedings of the Computational Advances in Bio and Medical Sciences, 2020

Gaps and Runs in Syntenic Alignments.

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Proceedings of the Algorithms for Computational Biology, 2020

2019

Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics.

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IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment.

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BMC Bioinform., 2019

A branching process for homology distribution-based inference of polyploidy, speciation and loss.

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Algorithms Mol. Biol., 2019

2018

Evolutionary Model for the Statistical Divergence of Paralogous and Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation.

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IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Resolution effects in reconstructing ancestral genomes.

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Madisyn Gabrielle Turcotte

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BMC Genom., 2018

Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae.

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Proceedings of the Comparative Genomics - 16th International Conference, 2018

2016

Locating rearrangement events in a phylogeny based on highly fragmented assemblies.

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BMC Genom., 2016

The Trees in the Peaks.

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Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016

2015

Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling.

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Carlos Fernando Buen Abad Najar

BMC Bioinform., December, 2015

Graph-Theoretic Modelling of the Domain Chaining Problem.

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[DOI]

Poly H. da Silva

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Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014

Practical halving; the Nelumbo nucifera evidence on early eudicot evolution.

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Comput. Biol. Chem., 2014

2013

Practical aliquoting of flowering plant genomes.

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BMC Bioinform., 2013

The dynamics of functional classes of plant genes in rediploidized ancient polyploids.

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[DOI]

Eric C. H. Chen

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Carlos Fernando Buen Abad Najar

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Lorenzo Carretero-Paulet

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Victor A. Albert

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BMC Bioinform., 2013

Fractionation, Rearrangement, Consolidation, Reconstruction.

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Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012

Scaffold Filling under the Breakpoint and Related Distances.

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IEEE ACM Trans. Comput. Biol. Bioinform., 2012

A model for biased fractionation after whole genome duplication.

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BMC Genom., 2012

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.

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BMC Bioinform., 2012

A consolidation algorithm for genomes fractionated after higher order polyploidization.

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BMC Bioinform., 2012

Fractionation, rearrangement and subgenome dominance.

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Bioinform., 2012

Ancient angiosperm hexaploidy meets ancestral eudicot gene order.

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[DOI]

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Victor A. Albert

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Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011

On the PATHGROUPS approach to rapid small phylogeny.

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BMC Bioinform., 2011

Fractionation statistics.

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BMC Bioinform., 2011

OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations.

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Krister M. Swenson

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Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

Scaffold filling, contig fusion and comparative gene order inference.

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[DOI]

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Victor A. Albert

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BMC Bioinform., 2010

Pathgroups, a dynamic data structure for genome reconstruction problems.

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Bioinform., 2010

Scaffold Filling under the Breakpoint Distance.

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Proceedings of the Comparative Genomics - International Workshop, 2010

Analysis of Applicability of Strategic Trade Policy to China's Electronics and Information Industry: A Perspective from Market Power.

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Proceedings of the International Conference on E-Business and E-Government, 2010

2009

Issues in the Reconstruction of Gene Order Evolution.

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J. Comput. Sci. Technol., 2009

Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm Phylogeny.

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Claude de Pamphilis

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James H. Leebens-Mack

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Victor A. Albert

J. Comput. Biol., 2009

Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome.

[BibT_eX]

[DOI]

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James H. Leebens-Mack

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Claude de Pamphilis

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Victor A. Albert

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J. Bioinform. Comput. Biol., 2009

Multichromosomal median and halving problems under different genomic distances.

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BMC Bioinform., 2009

2008

Descendants of Whole Genome Duplication within Gene Order Phylogeny.

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J. Comput. Biol., 2008

Multichromosomal Genome Median and Halving Problems.

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Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny.

[BibT_eX]

[DOI]

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Claude W. dePamphilis

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James H. Leebens-Mack

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Victor A. Albert

Proceedings of the Comparative Genomics, International Workshop, 2008

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.

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Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis.

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IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes.

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J. Comput. Biol., 2007

Algorithms for the Extraction of Synteny Blocks from Comparative Maps.

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Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Parts of the Problem of Polyploids in Rearrangement Phylogeny.

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Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007

Polyploids, genome halving and phylogeny.

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Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

Genome rearrangements with partially ordered chromosomes.

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J. Comb. Optim., 2006

Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes.

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Proceedings of the Comparative Genomics, 2006

Rearrangement of Noisy Genomes.

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Proceedings of the Computational Science, 2006

2005

Reversals of Fortune.

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Aleksander Lenert

Proceedings of the Comparative Genomics, 2005

Reversal distance for partially ordered genomes.

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[DOI]

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Aleksander Lenert

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Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

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