Christos A. Ouzounis

According to our database, Christos A. Ouzounis authored at least 58 papers between 1994 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA.

Christos A. Ouzounis

Biosyst., 2024

2023

CGG toolkit: Software components for computational genomics.

Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis

PLoS Comput. Biol., November, 2023

Bio-Electrical Nanonetworks: A New Paradigm of Biological Nanocommunication based on Living Cable Bacteria Filaments.

Konstantinos F. Kantelis, Vassilios Asteriou, Aliki Papadimitriou, Anthi Petrou, Christos A. Ouzounis, Lefteris Angelis, Ioannis S. Vizirianakis, Petros Nicopolitidis, Georgios I. Papadimitriou

Proceedings of the 10th ACM International Conference on Nanoscale Computing and Communication, 2023

2022

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.

Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2022

2021

The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective.

Christos Karapiperis, Anastasia Chasapi, Lefteris Angelis, Zacharias G. Scouras, Pier G. Mastroberardino, Soile Tapio, Michael Atkinson, Christos A. Ouzounis

Big Data, 2021

2020

DisProt: intrinsic protein disorder annotation in 2020.

András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2020

The bioinformatics wealth of nations.

Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis

Bioinform., 2020

Disentangling the complexity of low complexity proteins.

Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro

Briefings Bioinform., 2020

2019

Establishment of computational biology in Greece and Cyprus: Past, present, and future.

Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis

PLoS Comput. Biol., 2019

2017

Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment.

Shakuntala Baichoo, Christos A. Ouzounis

Biosyst., 2017

BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution.

Fotis E. Psomopoulos, Dimitrios M. Vitsios, Shakuntala Baichoo, Christos A. Ouzounis

Bioinform., 2017

Kernel Projection of Latent Structures Regression for Facial Animation Retargeting.

Christos A. Ouzounis, Alex Kilias, Christos Mousas

Proceedings of the VRIPHYS 2017 : 13th Workshop on Virtual Reality Interaction and Physical Simulation, 2017

2016

Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery.

Christos Karapiperis, Stefan J. Kempf, Roel Quintens, Omid Azimzadeh, Victoria Linares Vidal, Simonetta Pazzaglia, Dimitry Bazyka, Pier G. Mastroberardino, Zacharias G. Scouras, Soile Tapio, Mohammed Abderrafi Benotmane, Christos A. Ouzounis

BMC Bioinform., 2016

2015

Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering.

Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis

Int. J. Artif. Intell. Tools, 2015

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery.

Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos

Bioinform., 2015

Using Personalized Finger Gestures for Navigating Virtual Characters.

Christos A. Ouzounis, Christos Mousas, Christos-Nikolaos Anagnostopoulos, Paul Newbury

Proceedings of the Workshop on Virtual Reality Interaction and Physical Simulation, 2015

2014

BioTextQuest⁺: a knowledge integration platform for literature mining and concept discovery.

Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos

Bioinform., 2014

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey.

Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos

Briefings Bioinform., 2014

2012

Rise and Demise of Bioinformatics? Promise and Progress.

Christos A. Ouzounis

PLoS Comput. Biol., 2012

Multi-genome Core Pathway Identification through Gene Clustering.

Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis

Proceedings of the Artificial Intelligence Applications and Innovations, 2012

Keynote lectures.

Metin Akay, Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade, Christos A. Ouzounis

Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011

BioTextQuest: a web-based biomedical text mining suite for concept discovery.

Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas

Bioinform., 2011

2010

A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin.

Najl V. Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolai V. Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos A. Ouzounis, Sophia Tsoka, Frank O. Nestle

PLoS Comput. Biol., 2010

Promoter Complexity and Tissue-Specific Expression of Stress Response Components in <i>Mytilus galloprovincialis</i>, a Sessile Marine Invertebrate Species.

Chrysa Pantzartzi, Elena Drosopoulou, Minas Yiangou, Ignat Drozdov, Sophia Tsoka, Christos A. Ouzounis, Zacharias G. Scouras

PLoS Comput. Biol., 2010

2009

Stratification of co-evolving genomic groups using ranked phylogenetic profiles.

Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A. Ouzounis

BMC Bioinform., 2009

2008

PuReD-MCL: a graph-based PubMed document clustering methodology.

Theodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis

Bioinform., 2008

2007

CORRIE: enzyme sequence annotation with confidence estimates.

Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis

BMC Bioinform., 2007

2006

Highly consistent patterns for inherited human diseases at the molecular level.

Núria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis

Bioinform., 2006

2005

Probabilistic annotation of protein sequences based on functional classifications.

Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit

BMC Bioinform., 2005

Clustering the annotation space of proteins.

Victor Kunin, Christos A. Ouzounis

BMC Bioinform., 2005

MagicMatch - cross-referencing sequence identifiers across databases.

Mike Smith, Victor Kunin, Leon Goldovsky, Anton J. Enright, Christos A. Ouzounis

Bioinform., 2005

The properties of protein family space depend on experimental design.

Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis

Bioinform., 2005

CoGenT++: an extensive and extensible data environment for computational genomics.

Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis

Bioinform., 2005

2004

Robustness of Metabolic Map Reconstruction.

Dag G. Ahrén, Christos A. Ouzounis

J. Bioinform. Comput. Biol., 2004

Properties of Genes involved in Human Genetic Disease.

Núria López-Bigas, Christos A. Ouzounis

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

2003

PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1.

Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis

Bioinform., 2003

Early bioinformatics: the birth of a discipline - a personal view.

Christos A. Ouzounis, Alfonso Valencia

Bioinform., 2003

GeneTRACE - Reconstruction of Gene Content of Ancestral Species.

Victor Kunin, Christos A. Ouzounis

Bioinform., 2003

Comparison of sequence masking algorithms and the detection of biased protein sequence regions.

David P. Kreil, Christos A. Ouzounis

Bioinform., 2003

COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics.

Paul J. Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis

Bioinform., 2003

Evaluation of annotation strategies using an entire genome sequence.

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis

Bioinform., 2003

2002

Bioinformatics and the theoretical foundations of molecular biology.

Christos A. Ouzounis

Bioinform., 2002

Modeling the percolation of annotation errors in a database of protein sequences.

Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis

Bioinform., 2002

2001

BioLayout-an automatic graph layout algorithm for similarity visualization.

Anton J. Enright, Christos A. Ouzounis

Bioinform., 2001

Transcription-associated protein families are primarily taxon-specific.

Richard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis

Bioinform., 2001

TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology.

Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

2000

CAST: an iterative algorithm for the complexity analysis of sequence tracts.

Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis

Bioinform., 2000

Two or three myths about bioinformatics.

Christos A. Ouzounis

Bioinform., 2000

GeneRAGE: a robust algorithm for sequence clustering and domain detection.

Anton J. Enright, Christos A. Ouzounis

Bioinform., 2000

A Million Annotations for the Molecular Biologist.

Christos A. Ouzounis

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1999

Automated genome sequence analysis and annotation.

Miguel A. Andrade, Nigel P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, Angelo Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander

Bioinform., 1999

Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions.

Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

EUCLID: automatic classification of proteins in functional classes by their database annotations.

Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia

Bioinform., 1998

1997

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.

Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis

Comput. Appl. Biosci., 1997

Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.

Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1996

HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae.

Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1995

The Functional Composition of Living Machines as a Design Principle for Artificial Organisms.

Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander

Proceedings of the Advances in Artificial Life, 1995

1994

GeneQuiz: A Workbench for Sequence Analysis.

Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994