Christopher Pockrandt

According to our database, Christopher Pockrandt authored at least 8 papers between 2016 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Metagenomic classification with KrakenUniq on low-memory computers.

Christopher Pockrandt, Aleksey V. Zimin, Steven L. Salzberg

J. Open Source Softw., December, 2022

PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.

Christopher Pockrandt, Martin Steinegger, Steven L. Salzberg

Bioinform., 2022

2021

TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.

Ales Varabyou, Geo Pertea, Christopher Pockrandt, Mihaela Pertea

Bioinform., 2021

2020

GenMap: ultra-fast computation of genome mappability.

Christopher Pockrandt, Mai Alzamel, Costas S. Iliopoulos, Knut Reinert

Bioinform., 2020

2019

Approximate String Matching: Improving Data Structures and Algorithms.

Christopher Pockrandt

PhD thesis, 2019

2017

FAMOUS: Fast Approximate string Matching using OptimUm search Schemes.

Kiavash Kianfar, Christopher Pockrandt, Bahman Torkamandi, Haochen Luo, Knut Reinert

CoRR, 2017

EPR-Dictionaries: A Practical and Fast Data Structure for Constant Time Searches in Unidirectional and Bidirectional FM Indices.

Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert

Proceedings of the Research in Computational Molecular Biology, 2017

2016

Constant-time and space-efficient unidirectional and bidirectional FM-indices using EPR-dictionaries.

Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert

CoRR, 2016