Christopher J. O. Baker

According to our database, Christopher J. O. Baker authored at least 53 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Perspectives on automated composition of workflows in the life sciences.

Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft

F1000Research, 2021

2019

A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability.

Mohammad Sadnan Al Manir, Jon Haël Brenas, Christopher J. O. Baker, Arash Shaban-Nejad

CoRR, 2019

A Working Semantic Model for the Integration of Occupation, Function and Health.

Anil Adisesh, Hongchang Bao, Mohammad Sadnan Al Manir, Christopher J. O. Baker

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

Decision Support for Agricultural Consultants With Semantic Data Federation.

Mohammad Sadnan Al Manir, Bruce Spencer, Christopher J. O. Baker

Int. J. Agric. Environ. Inf. Syst., 2018

Design of a framework to support reuse of Open Data about agriculture.

Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie, Christopher J. O. Baker

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Exploring Semantic Data Federation to Enable Malaria Surveillance Queries.

Jon Haël Brenas, Mohammad Sadnan Al Manir, Kate Zinszer, Christopher J. O. Baker, Arash Shaban-Nejad

Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018

2017

A Malaria Analytics Framework to Support Evolution and Interoperability of Global Health Surveillance Systems.

Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad

IEEE Access, 2017

A Change Management Dashboard for the SIEMA Global Malaria Surveillance Infrastructure.

Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad

Proceedings of the ISWC 2017 Posters & Demonstrations and Industry Tracks co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 23rd - to, 2017

2016

From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections.

Arash Shaban-Nejad, Hiroshi Mamiya, Alexandre Riazanov, Alan J. Forster, Christopher J. O. Baker, Robyn Tamblyn, David L. Buckeridge

J. Medical Syst., 2016

Automated generation of SADI semantic web services for clinical intelligence.

Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker

Proceedings of the International Workshop on Semantic Big Data, 2016

Valet SADI: Provisioning SADI Web Services for Semantic Querying of Relational Databases.

Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker

Proceedings of the 20th International Database Engineering & Applications Symposium, 2016

2015

Automated Generation of SADI Web Services for Clinical Intelligence using Ruled-Based Semantic Mappings.

Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

iCyrus: A Semantic Framework for Biomedical Image Discovery.

Syed Ahmad Chan Bukhari, Mate Levente Nagy, Paolo Ciccarese, Michael Krauthammer, Christopher J. O. Baker

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

BIM: an open ontology for the annotation of biomedical images.

Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Benchmarking infrastructure for mutation text mining.

Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker

J. Biomed. Semant., 2014

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.

Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf

J. Biomed. Semant., 2014

SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment.

Syed Ahmad Chan Bukhari, Michael Krauthammer, Christopher J. O. Baker

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Offshore Holdings Analytics Using Datalog+ RuleML Rules.

Mohammad Sadnan Al Manir, Christopher J. O. Baker

Proceedings of the RuleML 2014 Challenge and the RuleML 2014 Doctoral Consortium hosted by the 8th International Web Rule Symposium, 2014

2013

Semantic querying of relational data for clinical intelligence: a semantic web services-based approach.

Alexandre Riazanov, Artjom Klein, Arash Shaban-Nejad, Gregory W. Rose, Alan J. Forster, David L. Buckeridge, Christopher J. O. Baker

J. Biomed. Semant., 2013

Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework.

Ahmad C. Bukhari, Artjom Klein, Christopher J. O. Baker

Proceedings of the Data Integration in the Life Sciences - 9th International Conference, 2013

Generating Semantic Web Services from Declarative Descriptions.

Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker

Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, 2013

2012

HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections.

Arash Shaban-Nejad, Alexandre Riazanov, Katia M. L. Charland, Gregory W. Rose, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge

Proceedings of the 3rd International Conference on Ambient Systems, 2012

Ecotoxicology Data Federation with SADI Semantic Web Services.

Alexandre Riazanov, Matthew M. Hindle, E. Scott Goudreau, Chris Martyniuk, Christopher J. O. Baker

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

PSOA RuleML API: A Tool for Processing Abstract and Concrete Syntaxes.

Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker

Proceedings of the Rules on the Web: Research and Applications, 2012

2011

Deploying mutation impact text-mining software with the SADI Semantic Web Services framework.

Alexandre Riazanov, Jonas Laurila Bergman, Christopher J. O. Baker

BMC Bioinform., 2011

Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics.

Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker

BMC Bioinform., 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn

J. Biomed. Semant., 2011

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.

Nona Naderi, Thomas Kappler, Christopher J. O. Baker, René Witte

Bioinform., 2011

Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data.

Alexandre Riazanov, Gregory W. Rose, Artjom Klein, Alan J. Forster, Christopher J. O. Baker, Arash Shaban-Nejad, David L. Buckeridge

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection.

Arash Shaban-Nejad, Gregory W. Rose, Anya Okhmatovskaia, Alexandre Riazanov, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge

Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Leveraging SADI Semantic Web Services to Exploit Fish Ecotoxicology Data.

Matthew M. Hindle, Alexandre Riazanov, Edward S. Goudreau, Christopher J. Martyniuk, Christopher J. O. Baker

Proceedings of the 3rd Canadian Semantic Web Symposium (CSWS2011), 2011

Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation.

Alexandre Kouznetsov, Jonas B. Laurila, Christopher J. O. Baker, Bradley Shoebottom

Proceedings of the 25th IEEE International Conference on Advanced Information Networking and Applications Workshops, 2011

Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information.

Christopher J. O. Baker, Rajaraman Kanagasabai

Proceedings of the 25th IEEE International Conference on Advanced Information Networking and Applications, 2011

2010

Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support.

Alexandre Kouznetsov, Bradley Shoebottom, René Witte, Christopher J. O. Baker

Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010

Algorithm for Grounding Mutation Mentions from Text to Protein Sequences.

Jonas Laurila Bergman, Rajaraman Kanagasabai, Christopher J. O. Baker

Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

2009

Between proteins and phenotypes: annotation and interpretation of mutations.

Christopher J. O. Baker, Dietrich Rebholz-Schuhmann

BMC Bioinform., 2009

Slicing through the Scientific Literature.

Christopher J. O. Baker, Patrick Lambrix, Jonas Laurila Bergman, Kanagasabai Rajaraman, Wee Tiong Ang

Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2008

Ontology-centric integration and navigation of the dengue literature.

Menaka Rajapakse, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Mark J. Schreiber, Christopher J. O. Baker

J. Biomed. Informatics, 2008

The Second International Symposium on Languages in Biology and Medicine (LBM) 2007.

Jian Su, Christopher J. O. Baker

BMC Bioinform., 2008

Towards ontology-driven navigation of the lipid <i>bibliosphere</i>.

Christopher J. O. Baker, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Hong Sang Low, Markus R. Wenk

BMC Bioinform., 2008

Knowledge Translation: Computing the Query Potential of Bio-ontologies.

Wee Tiong Ang, Rajaraman Kanagasabai, Christopher J. O. Baker

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

Online everywhere: evolving mobile instant messaging practices.

Donald J. Patterson, Christopher J. O. Baker, Xianghua Ding, Samuel J. Kaufman, Kah Liu, Andrew Zaldivar

Proceedings of the UbiComp 2008: Ubiquitous Computing, 10th International Conference, 2008

2007

Towards a Systematic Evaluation of protein Mutation Extraction Systems.

René Witte, Christopher J. O. Baker

J. Bioinform. Comput. Biol., 2007

A Workflow for Mutation Extraction and Structure Annotation.

Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker

J. Bioinform. Comput. Biol., 2007

Enhanced semantic access to the protein engineering literature using ontologies populated by text mining.

René Witte, Thomas Kappler, Christopher J. O. Baker

Int. J. Bioinform. Res. Appl., 2007

Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics.

Kanagasabai Rajaraman, Hong Sang Low, Wee Tiong Ang, Anitha Veeramani, Markus R. Wenk, Christopher J. O. Baker

Proceedings of the Workshop on First Industrial Results of Semantic Technologies, 2007

2006

Semantic web infrastructure for fungal enzyme biotechnologists.

Christopher J. O. Baker, Arash Shaban-Nejad, Xiao Su, Volker Haarslev, Greg Butler

J. Web Semant., 2006

Mutation Mining-A Prospector's Tale.

Christopher J. O. Baker, René Witte

Inf. Syst. Frontiers, 2006

Using Selectional Restrictions to Query an OWL Ontology.

Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler

Proceedings of the Formal Ontology in Information Systems, 2006

A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data.

Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker

Proceedings of the Canadian Semantic Web, 2006

Ontoligent Interactive Query Tool.

Christopher J. O. Baker, Xiao Su, Greg Butler, Volker Haarslev

Proceedings of the Canadian Semantic Web, 2006

2005

The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics.

Arash Shaban-Nejad, Christopher J. O. Baker, Volker Haarslev, Greg Butler

Proceedings of the Semantic Web - ISWC 2005, 4th International Semantic Web Conference, 2005

Combining Biological Databases and Text Mining to Support New Bioinformatics Applications.

René Witte, Christopher J. O. Baker

Proceedings of the Natural Language Processing and Information Systems, 2005