Christopher J. Langmead

Orcid: 0000-0001-7521-6736

Affiliations:
  • Carnegie Mellon University, Pittsburgh, USA


According to our database1, Christopher J. Langmead authored at least 44 papers between 1995 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Peptide binding classification on quantum computers.
Quantum Mach. Intell., June, 2024

2022
Deep Normed Embeddings for Patient Representation.
CoRR, 2022

2021
Unifying Cardiovascular Modelling with Deep Reinforcement Learning for Uncertainty Aware Control of Sepsis Treatment.
CoRR, 2021

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data.
BMC Bioinform., 2021

Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories.
Bioinform., 2021

Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution.
Algorithms Mol. Biol., 2021

2020
Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution.
Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

2015
Automated parameter estimation for biological models using Bayesian statistical model checking.
BMC Bioinform., December, 2015

Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models.
J. Comput. Biol., 2015

2014
Parameter discovery in stochastic biological models using simulated annealing and statistical model checking.
Int. J. Bioinform. Res. Appl., 2014

Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model.
Int. J. Bioinform. Res. Appl., 2014

Parameter discovery for stochastic computational models in systems biology using Bayesian model checking.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2012
Synthesis of insulin pump controllers from safety specifications using Bayesian model validation.
Int. J. Bioinform. Res. Appl., 2012

Learning generative models of molecular dynamics.
BMC Genom., 2012

Exploring behaviors of stochastic differential equation models of biological systems using change of measures.
BMC Bioinform., 2012

Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011
Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement.
Theor. Comput. Sci., 2011

Approximating Correlated Equilibria using Relaxations on the Marginal Polytope.
Proceedings of the 28th International Conference on Machine Learning, 2011

Poster: Synthesis of biochemical models.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Exploring behaviors of SDE models of biological systems using change of measures.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

When to stop verification?: Statistical trade-off between expected loss and simulation cost.
Proceedings of the Design, Automation and Test in Europe, 2011

2010
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations.
J. Comput. Biol., 2010

Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.
J. Comput. Biol., 2010

Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments.
Proceedings of the 5th International Conference on System of Systems Engineering, 2010

2009
Symbolic Approaches for Finding Control Strategies in Boolean Networks.
J. Bioinform. Comput. Biol., 2009

Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.
Proceedings of the Research in Computational Molecular Biology, 2009

A Bayesian approach to protein model quality assessment.
Proceedings of the 26th Annual International Conference on Machine Learning, 2009

A Bayesian Approach to Model Checking Biological Systems.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2008
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation.
J. Comput. Biol., 2008

Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

2007
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2006
A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

2005
A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology.
Int. J. Robotics Res., 2005

2004
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
J. Comput. Biol., 2004

High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns.
J. Comput. Biol., 2003

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

3D Structural Homology Detection via Unassigned Residual Dipolar Couplings.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

2001
Extracting structural information using time-frequency analysis of protein NMR data.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

1995
Sound Analysis, Comparison and Modification Based on Perceptual Model of Timbre.
Proceedings of the 1995 International Computer Music Conference, 1995


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