Christopher G. Chute

BMC Medical Informatics Decis. Mak., November, 2021

ICD-11: A catalyst for advancing patient safety surveillance globally.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., November, 2021

Overview of ICD-11 architecture and structure.

[BibT_eX]

[DOI]

Can Çelik

BMC Medical Informatics Decis. Mak., November, 2021

The Human Phenotype Ontology in 2021.

[BibT_eX]

[DOI]

Maximilian Hastreiter

Monica C. Munoz-Torres

Christopher J. Mungall

Melissa A. Haendel

Peter N. Robinson

Nucleic Acids Res., 2021

ICD-11: an international classification of diseases for the twenty-first century.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2021

ICD-11 extension codes support detailed clinical abstraction and comprehensive classification.

[BibT_eX]

[DOI]

Saskia E. Drösler

Stefanie Weber

BMC Medical Informatics Decis. Mak., 2021

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.

[BibT_eX]

[DOI]

Christopher P. Austin

Ken R. Gersing

J. Am. Medical Informatics Assoc., 2021

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).

[BibT_eX]

[DOI]

CoRR, 2021

2020

Toward a Harmonized WHO Family of International Classifications Content Model.

[BibT_eX]

[DOI]

Jeewani Anupama Ginige

Catherine Sykes

Can Çelik

Robert Jakob

Proceedings of the AMIA 2020, 2020

2019

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.

[BibT_eX]

[DOI]

npj Digit. Medicine, 2019

On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL.

[BibT_eX]

[DOI]

J. Biomed. Informatics X, 2019

Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon.

[BibT_eX]

[DOI]

Karamarie Fecho

Stanley C. Ahalt

Saravanan Arunachalam

J. Biomed. Informatics, 2019

The 2018 fellow cohort of the American College of Medical Informatics.

[BibT_eX]

[DOI]

Suzanne Bakken

William M. Tierney

Gretchen Purcell Jackson

James J. Cimino

J. Am. Medical Informatics Assoc., 2019

2018

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

SMART-on-FHIR implemented over i2b2.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2017

Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

The Pluripotent Rendering of Clinical Data for Precision Medicine.

[BibT_eX]

[DOI]

Stanley M. Huff

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Value of Genetics-informed Drug Dosing Guidance in Pregnant Women: A Needs Assessment with Obstetric Healthcare Providers at Johns Hopkins.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

2016

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2016

Clinical element models in the SHARPn consortium.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2016

Developing a modular architecture for creation of rule-based clinical diagnostic criteria.

[BibT_eX]

[DOI]

BioData Min., 2016

Practical considerations for implementing genomic information resources.

[BibT_eX]

[DOI]

Appl. Clin. Inform., 2016

Read only SMART on FHIR Façade for I2b2.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2016

A Semantic Web RDF-based Approach for Modeling HL7 FHIR Profiles.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2016

2015

EHR based Genetic Testing Knowledge Base (iGTKB) Development.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., December, 2015

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Health information technology data standards get down to business: maturation within domains and the emergence of interoperability.

[BibT_eX]

[DOI]

Rachel L. Richesson

María Del Carmen Legaz-García

J. Am. Medical Informatics Assoc., 2015

Desiderata for computable representations of electronic health records-driven phenotype algorithms.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes.

[BibT_eX]

[DOI]

Marcos Menárguez Tortosa

Jesualdo Tomás Fernández-Breis

Cui Tao

J. Am. Medical Informatics Assoc., 2015

Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing.

[BibT_eX]

[DOI]

BioData Min., 2015

Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study.

[BibT_eX]

[DOI]

BioData Min., 2015

Feasibility of Modeling HL7 FHIR Profiles Using RDF Shape Expressions Language.

[BibT_eX]

[DOI]

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Semantic Alignment between ICD-11 and SNOMED CT.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

Representing and Validating Cancer Study Metadata Standard Using RDF Shapes Expression Language.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Harmonization of ICD-11 and SNOMED CT - Not just mapping! Practical and Theoretical Lessons & Benefits to Users and Implementers.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

2014

Research and applications: MedXN: an open source medication extraction and normalization tool for clinical text.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting.

[BibT_eX]

[DOI]

George Hripcsak

Meryl Bloomrosen

Patti Flatley Brennan

J. Am. Medical Informatics Assoc., 2014

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2014

A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2014

Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Cancer Based Pharmacogenomics Network for Drug Repurposing.

[BibT_eX]

[DOI]

Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2014

What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation.

[BibT_eX]

[DOI]

Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

ICD-11 and SNOMED CT Common Ontology: Circulatory System.

[BibT_eX]

[DOI]

Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

A Web-Based Tool for Development of a Common Ontology between ICD11 and SNOMED-CT.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Conference on Healthcare Informatics, 2014

Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard.

[BibT_eX]

[DOI]

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data.

[BibT_eX]

[DOI]

Proceedings of IEEE-EMBS International Conference on Biomedical and Health Informatics, 2014

iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors.

[BibT_eX]

[DOI]

Chen Wang

Michael T. Zimmermann

Naresh Prodduturi

Proceedings of the AMIA 2014, 2014

A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

An Automated Approach for Ranking Journals to Help in Clinician Decision Support.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Lexical Term Standardization of ICD-11 Using Semantic Web Technologies.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Developing a Section Labeler for Clinical Documents.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Evaluation of RxNorm for Medication Clinical Decision Support.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

2013

Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

Semantator: Semantic annotator for converting biomedical text to linked data.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

Terminology representation guidelines for biomedical ontologies in the semantic web notations.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2013

A common type system for clinical natural language processing.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2013

Using Semantic Web technology to support icd-11 textual definitions authoring.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2013

Using Semantic Web Techologies for the Generation of Domain Templates to Support Clinical Study Meta-Data.

[BibT_eX]

[DOI]

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Ontology-based Temporal Analysis for Medical Device Adverse Event - A Use Case Study on Late Stent Thrombosis.

[BibT_eX]

[DOI]

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability?

[BibT_eX]

Dipak Kalra

Proceedings of the MEDINFO 2013, 2013

Sharing Ontology between ICD 11 and SNOMED CT will enable Seamless Re-use and Semantic Interoperability.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2013, 2013

Using Linked Data for Mining Drug-Drug Interactions in Electronic Health Records.

[BibT_eX]

[DOI]

María Del Carmen Legaz-García

Proceedings of the MEDINFO 2013, 2013

Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF.

[BibT_eX]

[DOI]

Catalina Martínez-Costa

Diego Boscá

Cui Tao

Jesualdo Tomás Fernández-Breis

Stefan Schulz

Proceedings of the MEDINFO 2013, 2013

Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2013, 2013

A Formal Model for RDF Dataset Constraints.

[BibT_eX]

[DOI]

Proceedings of the Semantic Technology - Third Joint International Conference, 2013

Phenotyping on EHR Data Using OWL and Semantic Web Technologies.

[BibT_eX]

[DOI]

Proceedings of the Smart Health - International Conference, 2013

Standardized Drug and Pharmacological Class Network Construction.

[BibT_eX]

[DOI]

Proceedings of the ICBO2013 Workshops: International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), International Workshop on Definitions in Ontologies (DO 2013), part of the Semantic Trilogy 2013 , Montreal, Quebec, Canada, July 6th, 2013

A Semantic Web-Based Approach for Harvesting Multilingual Textual Definitions from Wikipedia to Support ICD-11 Revision.

[BibT_eX]

[DOI]

Mining Anti-coagulant Drug-Drug Interactions from Electronic Health Records Using Linked Data.

[BibT_eX]

[DOI]

Proceedings of the Data Integration in the Life Sciences - 9th International Conference, 2013

Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Towards assigning references using semantic, journal and citation relevance.

[BibT_eX]

[DOI]

Dingcheng Li

Hongfang Liu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Prioritizing journals relevant to a topic for addressing clinicians' information needs.

[BibT_eX]

[DOI]

Piper A. Svensson-Ranallo

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Introduction and Implementation of Common Terminology Services 2 (CTS2).

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Psychological Assessment Instruments: A Coverage Analysis Using SNOMED CT, LOINC and QS Terminology.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Clinical Drug Extraction and Normalization from Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Medication Extraction and Normalization from Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Mining Drug-Drug Interaction Patterns from Linked Clinical Data.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

PhenotypePortal: An Open-Source Library and Platform for Authoring, Executing and Visualization of Electronic Health Records Driven Phenotyping Algorithms.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Coreference Resolution from Medical Corpus with Topic Modeling.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure.

[BibT_eX]

[DOI]

Hongfang Liu

Proceedings of the AMIA 2013, 2013

Building A Platform for Supporting Clinical Study Meta-Data Standards Authoring Using Scalable Semantic Web Technologies.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

2012

Erratum to "Cross-terminology mapping challenges: A demonstration using medication terminological systems" [J. Biomed. Inform. (2012) 613-625].

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2012

Cross-terminology mapping challenges: A demonstration using medication terminological systems.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2012

Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2012

Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record.

[BibT_eX]

[DOI]

Richard M. Weinshilboum

J. Am. Medical Informatics Assoc., 2012

The National Center for Biomedical Ontology.

[BibT_eX]

[DOI]

Margaret-Anne D. Storey

Barry Smith

J. Am. Medical Informatics Assoc., 2012

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Profiling structured product labeling with NDF-RT and RxNorm.

[BibT_eX]

[DOI]

Qian Zhu

J. Biomed. Semant., 2012

Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2012

Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2012

Building Standardized Semantic Web RESTful Services to Support ICD-11 Revision.

[BibT_eX]

[DOI]

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Towards event sequence representation, reasoning and visualization for EHR data.

[BibT_eX]

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

Applying linked data principles to represent patient's electronic health records at Mayo clinic: a case report.

[BibT_eX]

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes.

[BibT_eX]

[DOI]

Sunghwan Sohn

Sean P. Murphy

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Optimizing semantic MEDLINE for translational science studies using semantic web technologies.

[BibT_eX]

[DOI]

Cui Tao

Yuji Zhang

Matt-Mouley Bouamrane

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Harmonization of detailed clinical models with clinical study data standard.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Workshop on Managing Interoperability and compleXity in Health Systems, 2012

Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet Allocations for Big EHR Data.

[BibT_eX]

[DOI]

Proceedings of the 2012 Second International Conference on Cloud and Green Computing, 2012

(1) Obstacles and options for big-data applications in biomedicine: The role of standards and normalizations.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

A Standardized Drug and Drug Class Universal Network.

[BibT_eX]

[DOI]

Qian Zhu

Proceedings of the AMIA 2012, 2012

Tracking Immigrant Health with Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Common Terminology Services 2 (CTS2) for Biomedical Community.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Mining the Human Phenome using Semantic Web Technologies: A Case Study for Type 2 Diabetes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Towards a semantic lexicon for clinical natural language processing.

[BibT_eX]

[DOI]

Hongfang Liu

Stephen T. Wu

Dingcheng Li

Sunghwan Sohn

Peter J. Haug

Stanley M. Huff

Proceedings of the AMIA 2012, 2012

Modeling and Executing Electronic Health Records Driven Phenotyping Algorithms using the NQF Quality Data Model and JBoss® Drools Engine.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

A Proposal Provenance Model for ICD-11 Revision Beta Phase.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

The Pan-SHARP Project: An Interdisciplinary approach to Medication Reconciliation.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Visualization and Reporting of Results for Electronic Health Records Driven Phenotyping using the Open-Source popHealth Platform.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Comprehensive, Population-based, Peer-to-Peer Health Information Exchange and Clinical Data Repository Creation among Rural Practices and County Public Health Departments: The SE MN Beacon Community.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

2011

Towards a framework for developing semantic relatedness reference standards.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2011

Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2011

Drug side effect extraction from clinical narratives of psychiatry and psychology patients.

[BibT_eX]

[DOI]

Sunghwan Sohn

Jean-Pierre A. Kocher

Guergana K. Savova

J. Am. Medical Informatics Assoc., 2011

Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Letter: Further revamping VA's NDF-RT drug terminology for clinical research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records.

[BibT_eX]

[DOI]

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse.

[BibT_eX]

[DOI]

Margaret-Anne D. Storey

Barry Smith

Mark A. Musen

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Using RxNorm to Extract Medication Data from Electronic Health Records in the Rochester Epidemiology Project.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT.

[BibT_eX]

[DOI]

Robert J. G. Chalmers

Kent A. Spackman

Alan L. Rector

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

An Ontological Representation of Adverse Drug Events.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Proposed SKOS Extensions for BioPortal Terminology Services.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - Joint International Semantic Technology Conference, 2011

2010

An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records.

[BibT_eX]

[DOI]

Jonathan S. Schildcrout

J. Biomed. Informatics, 2010

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2010

Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2010

Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2010

Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2010

The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2010

Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2010 - 9th International Semantic Web Conference, 2010

2009

BioPortal: ontologies and integrated data resources at the click of a mouse.

[BibT_eX]

[DOI]

Margaret-Anne D. Storey

Mark A. Musen

Nucleic Acids Res., 2009

Formalizing ICD coding rules using Formal Concept Analysis.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2009

Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2009

Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2009

Survey of modular ontology techniques and their applications in the biomedical domain.

[BibT_eX]

[DOI]

Thomas M. Johnson

Integr. Comput. Aided Eng., 2009

2008

Word sense disambiguation across two domains: Biomedical literature and clinical notes.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2008

Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2008

Editorial Comments: Biosurveillance, Classification, and Semantic Health Technologies.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2008

Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources.

[BibT_eX]

[DOI]

Sridhar O. Dwarkanath

Proceedings of the 2th IEEE International Conference on Semantic Computing (ICSC 2008), 2008

Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition.

[BibT_eX]

[DOI]

Philip V. Ogren

Guergana K. Savova

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings.

[BibT_eX]

[DOI]

Proceedings of the Third International Conference on Knowledge Representation in Medicine, Phoenix, Arizona, USA, May 31st, 2008

Modular ontology techniques and their applications in the biomedical domain.

[BibT_eX]

[DOI]

Thomas M. Johnson

Proceedings of the IEEE International Conference on Information Reuse and Integration, 2008

LexValueSets: An Approach for Context-Driven Value Sets Extraction.

[BibT_eX]

[DOI]

Sridhar O. Dwarkanath

Proceedings of the AMIA 2008, 2008

Designing and testing computer based screening engine for severe sepsis/septic shock.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

LexSearch: An Approach for Leveraging Semantic Annotations to Searching Ontologies.

[BibT_eX]

[DOI]

Proceedings of the Semantic Scientific Knowledge Integration, 2008

2007

Measures of semantic similarity and relatedness in the biomedical domain.

[BibT_eX]

[DOI]

Siddharth Patwardhan

J. Biomed. Informatics, 2007

2006

Research Paper: Automating the Assignment of Diagnosis Codes to Patient Encounters Using Example-based and Machine Learning Techniques.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2006

Developing a corpus of clinical notes manually annotated for part-of-speech.

[BibT_eX]

[DOI]

Anni Coden

Int. J. Medical Informatics, 2006

A Hybrid Approach to Determining Modification of Clinical Diagnoses.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

Building and Evaluating Annotated Corpora for Medical NLP Systems.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

A Comparative Study of Supervised Learning as Applied to Acronym Expansion in Clinical Reports.

[BibT_eX]

[DOI]

Mahesh Joshi

Proceedings of the AMIA 2006, 2006

An End-to-End Supervised Target-Word Sense Disambiguation System.

[BibT_eX]

[DOI]

Mahesh Joshi

Richard Maclin

Proceedings of the Proceedings, 2006

2005

Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier.

[BibT_eX]

[DOI]

Sergey V. Pakhomov

J. Biomed. Informatics, 2005

Domain-specific language models and lexicons for tagging.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2005

Representing Lexical Components of Medical Terminologies in OWL.

[BibT_eX]

[DOI]

Kaustubh Supekar

Proceedings of the AMIA 2005, 2005

Frame Semantics and the Domain of Functioning, Disability and Health.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

Abbreviation and Acronym Disambiguation in Clinical Discourse.

[BibT_eX]

[DOI]

Serguei Pakhomov

Proceedings of the AMIA 2005, 2005

LexGrid Editor: Terminology Authoring for the Lexical Grid.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

2004

Modeling Guidelines for Integration into Clinical Workflow.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Terminology Access Methods Leveraging LDAP Resources.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

A Corpus Driven Approach Applying the "Frame Semantic" Method for Modeling Functional Status Terminology.

[BibT_eX]

[DOI]

Alexander P. Ruggieri

Proceedings of the MEDINFO 2004, 2004

Using Compund Codes for Automatic Classification of Clinical Diagnoses.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information.

[BibT_eX]

[DOI]

Serguei Pakhomov

Anni Coden

Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004

2003

A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2003

Identification of Patients with Congestive Heart Failure using a Binary Classifier: A Case Study.

[BibT_eX]

[DOI]

Sergey V. Pakhomov

Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

The Open Terminology Services (OTS) Project: AMIA 2003 Open Source Expo.

[BibT_eX]

[DOI]

Daniel C. Armbrust

Proceedings of the AMIA 2003, 2003

A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development.

[BibT_eX]

[DOI]

Guergana K. Savova

Marcelline R. Harris

Thomas M. Johnson

Proceedings of the AMIA 2003, 2003

Testing the Generalizability of the ISO Model for Nursing Diagnoses.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

Integrating Pharmacokinetics Knowledge into a Drug Ontology As an Extension to Support Pharmacogenomics.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

2002

Maximum entropy modeling for mining patient medication status from free text.

[BibT_eX]

[DOI]

Alexander Ruggieri

Proceedings of the AMIA 2002, 2002

The horizontal and vertical nature of patient phenotype retrieval: new directions for clinical text processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

An evaluation of unmediated versus mediated retrieval services.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

2001

Charting the Future of Public Health Informatics.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Guideline for Health Informatics: Controlled Health Vocabularies - Vocabulary Structure and High-level Indicators.

[BibT_eX]

[DOI]

Steven H. Brown

Proceedings of the MEDINFO 2001, 2001

Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

The Patient Record in Cancer Care.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Expression of a domain ontology model in unified modeling language for the World Health Organization International classification of impairment, disability, and handicap, version 2.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S.

[BibT_eX]

[DOI]

Kathleen A. McCormick

Dianne M. Reeves

Lawrence W. Wright

Proceedings of the AMIA 2001, 2001

2000

Review: Embedded Structures and Representation of Nursing Knowledge.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2000

Viewpoint: Clinical Classification and Terminology: Some History and Current Observations.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2000

A formal approach to integrating synonyms with a reference terminology.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Representation by standard terminologies of health status concepts contained in two health status assessment instruments used in rheumatic disease management.

[BibT_eX]

[DOI]

Alexander Ruggieri

Proceedings of the AMIA 2000, 2000

The content coverage and organizational structure of terminologies: the example of postoperative pain.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

A randomized controlled trial of concept based indexing of Web page content.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

1999

Barriers to the clinical implementation of compositionality.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

A large-scale evaluation of terminology integration characteristics.

[BibT_eX]

[DOI]

Furman S. McDonald

Philip V. Ogren

Dietlind Wahner-Roedler

Proceedings of the AMIA 1999, 1999

Towards Unambiguous Representation of Nursing-Sensitive Concepts.

[BibT_eX]

[DOI]

Marcelline R. Harris

Proceedings of the AMIA 1999, 1999

A randomized double-blind controlled trial of automated term dissection.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Detailed content and terminological properties of DSM-IV.

[BibT_eX]

[DOI]

Dermot Dunne

Proceedings of the AMIA 1999, 1999

Desiderata for a clinical terminology server.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

1998

Position Paper: A Framework for Comprehensive Health Terminology Systems in the United States: Development Guidelines, Criteria for Selection, and Public Policy Implications.

[BibT_eX]

[DOI]

Simon P. Cohn

James R. Campbell

J. Am. Medical Informatics Assoc., 1998

The Role of Compositionality in Standardized Problem List Generation.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO '98, 1998

A Java-Based Interface for Medical Research Project Classification Using Metaphrase.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

A Java-Based Tool for Entry of a Medical Problem List, Which Accesses a Remote Large-Scale Enterprise Vocabulary Server.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

A randomized controlled trial of automated term composition.

[BibT_eX]

[DOI]

Kent R. Bailey

Proceedings of the AMIA 1998, 1998

A clinical terminology in the post modern era: pragmatic problem list development.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

The Copernican era of healthcare terminology: a re-centering of health information systems.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

1997

Research Paper: Phase II Evaluation of Clinical Coding Schemes: Completeness, Taxonomy, Mapping, Definitions, and Clarity.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 1997

Supporting Postcoordination in an Electronic Problem List.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

Standardized problem list generation, utilizing the Mayo canonical vocabulary embedded within the Unified Medical Language System.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

Metaphrase: Achieving Formalized EMR Problem Lists from Informal Input.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

Clinical care management and workflow by episodes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

A clinically derived terminology: qualification to reduction.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

1996

Research Paper: The Content Coverage of Clinical classifications.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 1996

1994

An Example-Based Mapping Method for Text Categorization and Retrieval.

[BibT_eX]

[DOI]

Yiming Yang

ACM Trans. Inf. Syst., 1994

TREC-3 Retrieval Evaluation Using Expert Network.

[BibT_eX]

Proceedings of The Third Text REtrieval Conference, 1994

1993

An Application of Least Squares Fit Mapping to Text Information Retrieval.

[BibT_eX]

[DOI]

Yiming Yang

Proceedings of the 16th Annual International ACM-SIGIR Conference on Research and Development in Information Retrieval. Pittsburgh, PA, USA, June 27, 1993

1992

A Linear Least Squares Fit Mapping Method For Information Retrieval From Natural Language Texts.

[BibT_eX]

[DOI]

Yiming Yang