Christophe Godin

Orcid: 0000-0002-1202-8460

According to our database1, Christophe Godin authored at least 30 papers between 2002 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Characterization of random walks on space of unordered trees using efficient metric simulation.
Discret. Appl. Math., December, 2023

2022
Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets.
PLoS Comput. Biol., 2022

Robust Plant Cell Tracking in Fluorescence Microscopy 3D+T Series.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021
BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology.
J. Open Source Softw., 2021

2020
3D Plant Phenotyping: All You Need is Labelled Point Cloud Data.
Proceedings of the Computer Vision - ECCV 2020 Workshops, 2020

2019
Coupling water fluxes with cell wall mechanics in a multicellular model of plant development.
PLoS Comput. Biol., 2019

Approximation of trees by self-nested trees.
Proceedings of the Twenty-First Workshop on Algorithm Engineering and Experiments, 2019

2017
Modelling Curvature Effects Using L-Systems: From Discrete and Deterministic to Continuous and Stochastic.
Proceedings of the Theory and Practice of Natural Computing - 6th International Conference, 2017

2016
Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Lossy Compression of Unordered Rooted Trees.
Proceedings of the 2016 Data Compression Conference, 2016

2015
A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution.
PLoS Comput. Biol., 2015

Cell pairings for ascidian embryo registration.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

An Iterative Mesh Optimization Method for 3D Meristem Reconstruction at Cell Level.
Proceedings of the Biomedical Engineering Systems and Technologies, 2015

Meshing Meristems - An Iterative Mesh Optimization Method for Modeling Plant Tissue at Cell Resolution.
Proceedings of the BIOIMAGING 2015, 2015

3-d Tessellation of Plant Tissue - A Dual Optimization Approach to Cell-Level Meristem Reconstruction from Microscopy Images.
Proceedings of the 2015 International Conference on 3D Vision, 2015

2014
Combining Finite Element Method and L-Systems Using Natural Information Flow Propagation to Simulate Growing Dynamical Systems.
Proceedings of the Theory and Practice of Natural Computing, 2014

Spatio-temporal registration of embryo images.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2011
A Combinatorial Model of Phyllotaxis Perturbations in <i>Arabidopsis thaliana</i>.
Proceedings of the Combinatorial Pattern Matching - 22nd Annual Symposium, 2011

2010
Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009
PlantGL: A Python-based geometric library for 3D plant modelling at different scales.
Graph. Model., 2009

Structure from silhouettes: a new paradigm for fast sketch-based design of trees.
Comput. Graph. Forum, 2009

Efficient and robust reconstruction of botanical branching structure from laser scanned points.
Proceedings of the 11th International Conference on Computer-Aided Design and Computer Graphics, 2009

2008
<i>Flux-Based</i> Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development.
PLoS Comput. Biol., 2008

Multiscale Framework for Modeling and Analyzing Light Interception by Trees.
Multiscale Model. Simul., 2008

2006
A Critical Appraisal of the Box Counting Method to Assess the Fractal Dimension of Tree Crowns.
Proceedings of the Advances in Visual Computing, Second International Symposium, 2006

2003
Optimal mappings with minimum number of connected components in tree-to-tree comparison problems.
J. Algorithms, 2003

Interactive Design of Bonsai Tree Models.
Comput. Graph. Forum, 2003

An Edit Distance between Quotiented Trees.
Algorithmica, 2003

Introduction aux structures multi-échelles. Applications à la représentation des plantes.
, 2003

2002
L-systems and MTGs: Integrating Simulation and Formal Analysis of Architectural Plant Models.
Proceedings of the 16<sup>th</sup> European Simulation Multiconference: Modelling and Simulation 2002, 2002


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