Christophe Dessimoz

Orcid: 0000-0002-2170-853X

According to our database1, Christophe Dessimoz authored at least 53 papers between 2005 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
Towards predicting essential proteins via federated SPARQL queries.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022
The Quest for Orthologs orthology benchmark service in 2022.
Nucleic Acids Res., 2022

Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.
Distributed Parallel Databases, 2022

Federating and querying heterogeneous and distributed Web APIs and triple stores.
CoRR, 2022

OMAMO: orthology-based alternative model organism selection.
Bioinform., 2022

2021
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Nucleic Acids Res., 2021

OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
Bioinform., 2021

ISMB/ECCB 2021 proceedings.
Bioinform., 2021

Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data.
Proceedings of the SSDBM 2021: 33rd International Conference on Scientific and Statistical Database Management, 2021

2020
Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes.
PLoS Comput. Biol., 2020

The Quest for Orthologs benchmark service and consensus calls in 2020.
Nucleic Acids Res., 2020

A generalized Robinson-Foulds distance for labeled trees.
BMC Genom., 2020

Benchmarking gene ontology function predictions using negative annotations.
Bioinform., 2020

Parallel and Scalable Precise Clustering.
Proceedings of the PACT '20: International Conference on Parallel Architectures and Compilation Techniques, 2020

2019
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL.
F1000Research, 2019

Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the <i>OmaDB</i> packages for R and Python.
F1000Research, 2019

Parallel and Scalable Precise Clustering for Homologous Protein Discovery.
CoRR, 2019

Enhancing interoperable datasets with virtual links.
CoRR, 2019

iHam and pyHam: visualizing and processing hierarchical orthologous groups.
Bioinform., 2019

Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome.
Bioinform., 2019

Enabling semantic queries across federated bioinformatics databases.
Database J. Biol. Databases Curation, 2019

How Much Does GenoGuard Really "Guard"?: An Empirical Analysis of Long-Term Security for Genomic Data.
Proceedings of the 18th ACM Workshop on Privacy in the Electronic Society, 2019

VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2019 Conferences, 2019

2018
Submit a Topic Page to PLOS Computational Biology and Wikipedia.
PLoS Comput. Biol., 2018

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Nucleic Acids Res., 2018

Prioritising candidate genes causing QTL using hierarchical orthologous groups.
Bioinform., 2018

Gearing up to handle the mosaic nature of life in the quest for orthologs.
Bioinform., 2018

RecPhyloXML: a format for reconciled gene trees.
Bioinform., 2018

2017
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference.
Bioinform., 2017

2015
Inferring Horizontal Gene Transfer.
PLoS Comput. Biol., 2015

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.
Nucleic Acids Res., 2015

2014
Big data and other challenges in the quest for orthologs.
Bioinform., 2014

2013
Approximate Bayesian Computation.
PLoS Comput. Biol., 2013

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
Nat., 2013

2012
Quality of Computationally Inferred Gene Ontology Annotations.
PLoS Comput. Biol., 2012

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs.
PLoS Comput. Biol., 2012

Toward community standards in the quest for orthologs.
Bioinform., 2012

2011
OMA 2011: orthology inference among 1000 complete genomes.
Nucleic Acids Res., 2011

The what, where, how and why of gene ontology - a primer for bioinformaticians.
Briefings Bioinform., 2011

Base-calling for next-generation sequencing platforms.
Briefings Bioinform., 2011

Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera <i>Callorhinchus milii</i> (Holocephali, Chondrichthyes).
Briefings Bioinform., 2011

Editorial: Orthology and applications.
Briefings Bioinform., 2011

Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.
Briefings Bioinform., 2011

2009
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods.
PLoS Comput. Biol., 2009

The Microbe browser for comparative genomics.
Nucleic Acids Res., 2009

Algorithm of OMA for large-scale orthology inference.
BMC Bioinform., 2009

2008
Alignments with non-overlapping moves, inversions and tandem duplications in <i>O</i> ( <i>n</i> <sup>4</sup>) time.
J. Comb. Optim., 2008

DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework.
Proceedings of the Research in Computational Molecular Biology, 2008

2007
OMA Browser - Exploring orthologous relations across 352 complete genomes.
Bioinform., 2007

2006
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences.
BMC Bioinform., 2006

2005
A Dimensionless Fit Measure for Phylogenetic Distance Trees.
J. Bioinform. Comput. Biol., 2005

OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements.
Proceedings of the Comparative Genomics, 2005


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