Christoph Kaleta

According to our database, Christoph Kaleta authored at least 24 papers between 2007 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis.

Jan Ewald, Flora Rivieccio, Lukás Radosa, Stefan Schuster, Axel A. Brakhage, Christoph Kaleta

PLoS Comput. Biol., 2021

2017

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism.

Jan Ewald, Martin Bartl, Thomas Dandekar, Christoph Kaleta

PLoS Comput. Biol., 2017

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.

Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta

PLoS Comput. Biol., 2017

2016

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.

Sebastian Germerodt, Katrin Bohl, Anja Lück, Samay Pande, Anja Schröter, Christoph Kaleta, Stefan Schuster, Christian Kost

PLoS Comput. Biol., 2016

2015

A minimal model for explaining the higher ATP production in the Warburg effect.

Stefan Schuster, Daniel Boley, Philip Möller, Christoph Kaleta

PeerJ Prepr., 2015

Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation.

Gundián M. de Hijas-Liste, Eva Balsa-Canto, Jan Ewald, Martin Bartl, Pu Li, Julio R. Banga, Christoph Kaleta

BMC Bioinform., 2015

Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.

Ralf Schmidt, Silvio Waschina, Daniela Boettger-Schmidt, Christian Kost, Christoph Kaleta

Bioinform., 2015

2013

Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition.

Gundián M. de Hijas-Liste, Eva Balsa-Canto, Julio R. Banga, Christoph Kaleta

Proceedings of the 21st Mediterranean Conference on Control and Automation, 2013

2011

<i>In Silico</i> Evidence for Gluconeogenesis from Fatty Acids in Humans.

Christoph Kaleta, Luis F. de Figueiredo, Sarah Werner, Reinhard Guthke, Michael Ristow, Stefan Schuster

PLoS Comput. Biol., 2011

More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli.

Anna-Katharina Göhler, Öznur Kökpinar, Wolfgang Schmidt-Heck, Robert Geffers, Reinhard Guthke, Ursula Rinas, Stefan Schuster, Knut Jahreis, Christoph Kaleta

BMC Syst. Biol., 2011

Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach.

Stefan Schuster, Luis F. de Figueiredo, Anja Schröter, Christoph Kaleta

Biosyst., 2011

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis.

Christoph Kaleta, Luis F. de Figueiredo, Ines Heiland, Steffen Klamt, Stefan Schuster

Biosyst., 2011

2010

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis.

Christoph Kaleta, Anna-Katharina Göhler, Stefan Schuster, Knut Jahreis, Reinhard Guthke, Swetlana Nikolajewa

BMC Syst. Biol., 2010

A parallel algorithm to compute chemical organizations in biological networks.

Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich

Bioinform., 2010

CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks.

Katrin Bohl, Luis F. de Figueiredo, Oliver Hädicke, Steffen Klamt, Christian Kost, Stefan Schuster, Christoph Kaleta

Proceedings of the German Conference on Bioinformatics 2010, 2010

2009

Using chemical organization theory for model checking.

Christoph Kaleta, Stephan Richter, Peter Dittrich

Bioinform., 2009

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.

Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell

Bioinform., 2009

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell

Bioinform., 2009

Computing the shortest elementary flux modes in genome-scale metabolic networks.

Luis F. de Figueiredo, Adam Podhorski, Angel Rubio, Christoph Kaleta, John E. Beasley, Stefan Schuster, Francisco J. Planes

Bioinform., 2009

Computing Elementary Flux Modes in Genome-scale Metabolic Networks.

Christoph Kaleta, Luis F. de Figueiredo, Jörn Behre, Stefan Schuster

Proceedings of the German Conference on Bioinformatics 2009, 2009

2008

Phenotype prediction in regulated metabolic networks.

Christoph Kaleta, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich

BMC Syst. Biol., 2008

Computing chemical organizations in biological networks.

Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich

Bioinform., 2008

Chemical organizations in living systems.

Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio

Proceedings of the Eleventh International Conference on the Synthesis and Simulation of Living Systems, 2008

2007

Integrated network reconstruction, visualization and analysis using YANAsquare.

Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar

BMC Bioinform., 2007