Christian J. Stoeckert Jr.
Orcid: 0000-0002-5714-991XAffiliations:
- University of Pennsylvania, Philadelphia, USA
According to our database1,
Christian J. Stoeckert Jr.
authored at least 63 papers
between 1996 and 2022.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on orcid.org
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on dl.acm.org
On csauthors.net:
Bibliography
2022
Nucleic Acids Res., 2022
2021
Standardization of assay representation in the Ontology for Biomedical Investigations.
Database J. Biol. Databases Curation, 2021
Database J. Biol. Databases Curation, 2021
2020
A Robust, Self-Training Classifier for Medication Strings, with Quantitative and Semantic Confidence Metrics.
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020
2019
A Collaborative, Realism-Based, Electronic Healthcare Graph: Public Data, Common Data Models, and Practical Instantiation.
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis.
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB).
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
2018
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.
Nucleic Acids Res., 2018
Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO Project.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018
2017
Nucleic Acids Res., 2017
2016
Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
2014
2013
Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis.
BMC Syst. Biol., 2013
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
Diagnostic criteria and clinical guidelines standardization to automate case classification.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
2012
Nucleic Acids Res., 2012
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.
J. Biomed. Semant., 2012
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
Proceedings of the Formal Ontology in Information Systems, 2012
2011
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Nucleic Acids Res., 2011
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinform., 2011
AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments.
Database J. Biol. Databases Curation, 2011
The strategies WDK: a graphical search interface and web development kit for functional genomics databases.
Database J. Biol. Databases Curation, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Enriching the Ontology for Biomedical Investigations (OBI) to Improve its Suitability for Web Service Annotations.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
2010
Nucleic Acids Res., 2010
Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.
Bioinform., 2010
2009
Nucleic Acids Res., 2009
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens <i>Giardia lamblia</i> and <i>Trichomonas vaginalis</i>.
Nucleic Acids Res., 2009
Characterization of Unknown Adult Stem Cell Samples by Large Scale Data Integration and Artificial Neural Networks.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
Nucleic Acids Res., 2008
2007
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.
Nucleic Acids Res., 2007
Nucleic Acids Res., 2007
Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL).
Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007
2006
Nucleic Acids Res., 2006
BMC Bioinform., 2006
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Bioinform., 2006
2005
A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
Bioinform., 2005
2004
Nucleic Acids Res., 2004
RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
Bioinform., 2004
2003
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Res., 2003
2002
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res., 2002
2001
IBM Syst. J., 2001
Bioinform., 2001
2000
Generation of patterns from gene expression data by assigning confidence to differentially expressed genes.
Bioinform., 2000
1999
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Res., 1999
1998
Nucleic Acids Res., 1998
1996
EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base.
Proceedings of the German Conference on Bioinformatics, 1996
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996