Chris Upton

According to our database, Chris Upton authored at least 17 papers between 2000 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz

Briefings Bioinform., 2021

2014

Incongruencies in Vaccinia Virus Phylogenetic Trees.

Chad Smithson, Samantha Kampman, Benjamin M. Hetman, Chris Upton

Comput., 2014

2009

Suffix trees for very large genomic sequences.

Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton

Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

2008

A graph approach to the threshold all-against-all substring matching problem.

Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton

ACM J. Exp. Algorithmics, 2008

A new method for indexing genomes using on-disk suffix trees.

Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton

Proceedings of the 17th ACM Conference on Information and Knowledge Management, 2008

2007

GraphDNA: a Java program for graphical display of DNA composition analyses.

Jamie M. Thomas, Daniel Horspool, Gordon Brown, Vasily Tcherepanov, Chris Upton

BMC Bioinform., 2007

Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings.

Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis.

Aijazuddin Syed, Chris Upton

BMC Bioinform., 2006

Predicted function of the vaccinia virus G5R protein.

Melissa Da Silva, Ling Shen, Vasily Tcherepanov, Cristalle Watson, Chris Upton

Bioinform., 2006

A New Algorithm for Fast All-Against-All Substring Matching.

Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton

Proceedings of the String Processing and Information Retrieval, 2006

2005

Poxvirus Bioinformatics Resource Center: a comprehensive <i>Poxviridae</i> informational and analytical resource.

Elliot J. Lefkowitz, Chris Upton, Shankar S. Changayil, Charles Buck, Paula Traktman, R. Mark L. Buller

Nucleic Acids Res., 2005

Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches.

Joe Whitney, David J. Esteban, Chris Upton

BMC Bioinform., 2005

2004

Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments.

Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasily Tcherepanov, Chris Upton

BMC Bioinform., 2004

JDotter: a Java interface to multiple dotplots generated by dotter.

Ryan Brodie, Rachel L. Roper, Chris Upton

Bioinform., 2004

2002

Poxvirus Orthologous Clusters (POCs).

Angelika Ehlers, John Osborne, Stephanie Slack, Rachel L. Roper, Chris Upton

Bioinform., 2002

2000

Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.

David Hiscock, Chris Upton

Bioinform., 2000

BLAST Search Updater: a notification system for new database matches.

Matthew Boone, Chris Upton

Bioinform., 2000