Chongle Pan

According to our database, Chongle Pan authored at least 19 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics.

Bailu Zhang, Shichao Feng, Manushi Parajuli, Yi Xiong, Chongle Pan, Xuan Guo

Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians' Evaluation of Large Language Models for Smoking Cessation Interventions.

Paul Calle, Ruosi Shao, Yunlong Liu, Emily T. Hébert, Darla E. Kendzor, Jordan M. Neil, Michael S. Businelle, Chongle Pan

Proceedings of the CHI Conference on Human Factors in Computing Systems, 2024

2023

Bayesian inference for survival prediction of childhood Leukemia.

Yuning Cui, Yifu Li, Chongle Pan, Stephanie R. Brown, Rachel E. Gallant, Rui Zhu

Comput. Biol. Medicine, April, 2023

Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis.

Adrien Badré, Chongle Pan

PLoS Comput. Biol., 2023

Deep neural network improves the estimation of polygenic risk scores for breast cancer.

Adrien Badré, Li Zhang, Wellington Muchero, Justin C. Reynolds, Chongle Pan

CoRR, 2023

2022

MetaLP: An integrative linear programming method for protein inference in metaproteomics.

Shichao Feng, Hong-Long Ji, Huan Wang, Bailu Zhang, Ryan Sterzenbach, Chongle Pan, Xuan Guo

PLoS Comput. Biol., October, 2022

LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations.

Adrien Badré, Chongle Pan

IEEE Access, 2022

FineFDR: Fine-grained Taxonomy-specific False Discovery Rates Control in Metaproteomics.

Shengze Wang, Shichao Feng, Chongle Pan, Xuan Guo

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

IDIA: An Integrative Signal Extractor for Data-Independent Acquisition Proteomics.

Jiancheng Li, Chongle Pan, Xuan Guo

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2018

Sipros Ensemble improves database searching and filtering for complex metaproteomics.

Xuan Guo, Zhou Li, Qiuming Yao, Ryan S. Mueller, Jimmy K. Eng, David L. Tabb, IV William Judson Hervey, Chongle Pan

Bioinform., 2018

SORA: Scalable Overlap-graph Reduction Algorithms for Genome Assembly using Apache Spark in the Cloud.

Alexander J. Paul, Dylan Lawrence, Myoungkyu Song, Seung-Hwan Lim, Chongle Pan, Tae-Hyuk Ahn

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2015

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance.

Tae-Hyuk Ahn, Juanjuan Chai, Chongle Pan

Bioinform., 2015

2014

Omega: an Overlap-graph <i>de novo</i> Assembler for Metagenomics.

Bahlul Haider, Tae-Hyuk Ahn, Brian Bushnell, Juanjuan Chai, Alex Copeland, Chongle Pan

Bioinform., 2014

2013

Sipros/ProRata: a versatile informatics system for quantitative community proteomics.

Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, Chongle Pan

Bioinform., 2013

2012

Exhaustive database searching for amino acid mutations in proteomes.

Doug Hyatt, Chongle Pan

Bioinform., 2012

2010

A high-throughput <i>de novo </i>sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova

BMC Bioinform., 2010

2009

Scientific Data Analysis.

Chandrika Kamath, Nikil Wale, George Karypis, Gaurav Pandey, Vipin Kumar, Krishna Rajan, Nagiza F. Samatova, Paul Breimyer, Guruprasad Kora, Chongle Pan, Srikanth B. Yoginath

Proceedings of the Scientific Data Management - Challenges, Technology, and Deployment., 2009

2005

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.

Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu

Bioinform., 2005

2004

Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach.

Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004