Chi-Ren Shyu
Orcid: 0000-0001-9197-9522
According to our database1,
Chi-Ren Shyu
authored at least 124 papers
between 1999 and 2024.
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Bibliography
2024
Identifying gene expression programs in single-cell RNA-seq data using linear correlation explanation.
J. Biomed. Informatics, 2024
2023
Self-sovereign identity empowered non-fungible patient tokenization for health information exchange using blockchain technology.
Comput. Biol. Medicine, May, 2023
Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov.
J. Biomed. Informatics, March, 2023
Automated Detection of Poultry Farms from Aerial Images for Actionable AI System toward Biosecurity Applications.
Proceedings of the 52nd IEEE Applied Imagery Pattern Recognition Workshop, 2023
2022
ACM Trans. Knowl. Discov. Data, 2022
Thoughts on Non-IID Data Impact in Healthcare with Federated Learning Medical Blockchain.
Proceedings of the 4th IEEE International Conference on Cognitive Machine Intelligence, 2022
Found in Translation: Transforming Rules-Based Diabetes Phenotyping Algorithms into Reproducible Diabetes Cohorts from Real-World Data.
Proceedings of the AMIA 2022, 2022
2021
Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential.
J. Biomed. Informatics, 2021
2020
IEEE J. Biomed. Health Informatics, 2020
IEEE J. Biomed. Health Informatics, 2020
Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations.
Quant. Biol., 2020
Proceedings of the AMIA 2020, 2020
A Deep Exploratory Mining Approach for Discovering Associations between Family History of Type 1 Diabetes and Autoimmune and Related Conditions.
Proceedings of the AMIA 2020, 2020
Using novel exploratory subgroup mining to determine complication patterns of post colectomy based on hospital characteristics.
Proceedings of the AMIA 2020, 2020
Differentiating Genetic Risk Factors Between Triple Negative and Luminal Breast Cancer Subtypes Using Long Contrast Patterns Mining.
Proceedings of the AMIA 2020, 2020
Drug Repositioning for Colorectal Cancer Patient Subgroups Using Exploratory Mining and Network Analysis.
Proceedings of the AMIA 2020, 2020
2019
J. Am. Medical Informatics Assoc., 2019
Comput. Methods Programs Biomed., 2019
Proceedings of the Second International Workshop on Semantic Web Meets Health Data Management (SWH 2019) co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019
Developing a Taxonomy of Online Medical Calculators for Assessing Automatability and Clinical Efficiency Improvements.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
Quantifying and understanding the differences in visual activities with contrast subsequences.
Proceedings of the 11th ACM Symposium on Eye Tracking Research & Applications, 2019
Proceedings of the AMIA 2019, 2019
2018
Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups.
J. Biomed. Informatics, 2018
Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials.
Proceedings of the AMIA 2018, 2018
Leveraging Location to Integrate and Access Information for Analyzing Health Context.
Proceedings of the AMIA 2018, 2018
2017
Combining Contrast Mining with Logistic Regression To Predict Healthcare Utilization in a Managed Care Population.
Appl. Clin. Inform., 2017
Contrast Mining for Pattern Discovery and Descriptive Analytics to Tailor Sub-Groups of Patients Using Big Data Solutions.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Proceedings of the 19th IEEE International Symposium on Multimedia, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Discovering multifactorial associations with the development of age-related cataract using contrast mining.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Efficient GPU-accelerated extraction of imperfect inverted repeats from DNA sequences.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
IEEE J. Biomed. Health Informatics, 2016
Int. J. Semantic Comput., 2016
Int. J. Data Min. Bioinform., 2016
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.
Database J. Biol. Databases Curation, 2016
Proceedings of the Second IEEE International Conference on Big Data Computing Service and Applications, 2016
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Large scale extraction of perfect and imperfect DNA palindromes using in-memory computing.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Proceedings of the AMIA 2016, 2016
Automatic Workflow Extraction Using Sequential Pattern Mining and Electronic Medical Record Usage Data.
Proceedings of the AMIA 2016, 2016
RDF-Based Method to Uncover Implicit Health Communication Episodes from Unstructured Healthcare Data.
Proceedings of the AMIA 2016, 2016
2015
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction.
BMC Medical Informatics Decis. Mak., 2015
Genetic algorithm supported by graphical processing unit improves the exploration of effective connectivity in functional brain imaging.
Frontiers Comput. Neurosci., 2015
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
Proceedings of the AMIA 2015, 2015
Integrated Clinical Decision Support Systems: Systematic Review and Classification of Online Medical Calculators.
Proceedings of the AMIA 2015, 2015
2014
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning.
PLoS Comput. Biol., 2014
Uncovering influence links in molecular knowledge networks to streamline personalized medicine.
J. Biomed. Informatics, 2014
Non-invasive ambulatory monitoring of complex sEMG patterns and its potential application in the detection of vocal dysfunctions.
Proceedings of the 16th IEEE International Conference on e-Health Networking, 2014
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
2013
Applications of PathFinder Network Scaling for Improving the Ranking of Satellite Images.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2013
Proceedings of the 3rd IFAC International Conference on Intelligent Control and Automation Science, 2013
Comparing limb-volume measurement techniques: 3D models from an infrared depth sensor versus water displacement.
Proceedings of the IEEE 15th International Conference on e-Health Networking, 2013
TeleMDID: Mobile technology applications for interactive diagnoses in teledermatology clinics.
Proceedings of the IEEE 15th International Conference on e-Health Networking, 2013
Proceedings of the 2013 IEEE Symposium on Computational Intelligence in Healthcare and e-health, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Object behavior mining from mitochondiral shape databases for degenerated nerve disease studies.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
IEEE Trans. Geosci. Remote. Sens., 2012
Nucleic Acids Res., 2012
J. Assoc. Inf. Sci. Technol., 2012
Bioinform., 2012
Associative semantic ranking of satellite images using PathFinder Network Scaling ensemble methods.
Proceedings of the 2012 IEEE International Geoscience and Remote Sensing Symposium, 2012
Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012
Proceedings of the AMIA 2012, 2012
Proceedings of the AMIA 2012, 2012
2011
Entropy-Balanced Bitmap Tree for Shape-Based Object Retrieval From Large-Scale Satellite Imagery Databases.
IEEE Trans. Geosci. Remote. Sens., 2011
A SNOMED supported ontological vector model for subclinical disorder detection using EHR similarity.
Eng. Appl. Artif. Intell., 2011
BMC Bioinform., 2011
Database J. Biol. Databases Curation, 2011
Proceedings of the iConference 2011, 2011
Proceedings of the Bridging the Gulf: Communication and Information in Society, Technology, and Work, 2011
2010
Nucleic Acids Res., 2010
Visual-Semantic Modeling in Content-Based Geospatial Information Retrieval Using Associative Mining Techniques.
IEEE Geosci. Remote. Sens. Lett., 2010
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2010
Visual information mining and ranking using graded relevance assessments in satellite image databases.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2010
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
Multi-resolution tile-based follicle detection using color and textural information of follicular lymphoma IHC slides.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010
2009
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery.
J. Biomed. Informatics, 2009
Editorial for the special issue of knowledge discovery and management in biomedical information systems.
Inf. Syst. Frontiers, 2009
Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.
Bioinform., 2009
2008
The effects of conceptual description and search practice on users' mental models and information seeking in a case-based reasoning retrieval system.
Inf. Process. Manag., 2008
GeoCDX: An Automated Change Detection & Exploitation System for High Resolution Satelite Imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2008
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2008
2007
Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval.
IEEE Trans. Inf. Technol. Biomed., 2007
GeoIRIS: Geospatial Information Retrieval and Indexing System - Content Mining, Semantics Modeling, and Complex Queries.
IEEE Trans. Geosci. Remote. Sens., 2007
IEEE Signal Process. Mag., 2007
J. Bioinform. Comput. Biol., 2007
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2007
2006
BMC Bioinform., 2006
Knowledge Discovery by Mining Association Rules and Temporal-Spatial Information from Large-Scale Geospatial Image Databases.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006
Mining Visual Associations from User Feedback for Weighting Multiple Indexes in Geospatial Image Retrieval.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006
Fusion of Spectral and Spatial Information for Automated Change Detection in High Resolution Satellite Imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006
Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006
Predicting Cancer Interaction Networks Using Text-Mining and Structure Understanding.
Proceedings of the AMIA 2006, 2006
Applying Sequential Forward Floating Selection to Protein Structure Prediction with a Study of HIV-1 RP.
Proceedings of the AMIA 2006, 2006
Knowledge Discovery using Domain-Concept Mining Approach for the Behavioral Risk Factor Surveillance System (BRFSS) Data.
Proceedings of the AMIA 2006, 2006
Proceedings of the AMIA 2006, 2006
2005
Knowledge representation and sharing using visual semantic modeling for diagnostic medical image databases.
IEEE Trans. Inf. Technol. Biomed., 2005
A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index.
Int. J. Softw. Eng. Knowl. Eng., 2005
Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
BMC Bioinform., 2005
Mining image content associations for visual semantic modeling in geospatial information indexing and retrieval.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Automated object extraction through simplification of the differential morphological profile for high-resolution satellite imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Modeling Multi-object Spatial Relationships for Satellite Image Database Indexing and Retrieval.
Proceedings of the Image and Video Retrieval, 4th International Conference, 2005
2004
Nucleic Acids Res., 2004
ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval.
Nucleic Acids Res., 2004
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004
2003
Semantics modeling in diagnostic medical image databases using customized fuzzy membership functions.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003
EBS k-d Tree: An Entropy Balanced Statistical k-d Tree for Image Databases with Ground-Truth Labels.
Proceedings of the Image and Video Retrieval, Second International Conference, 2003
2002
Using Human Perceptual Categories for Content-Based Retrieval from a Medical Image Database.
Comput. Vis. Image Underst., 2002
Proceedings of the Storage and Retrieval for Media Databases 2002, 2002
Proceedings of the 16th International Conference on Pattern Recognition, 2002
2001
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001
2000
A Web-Based CBIR-Assisted Learning Tool for Radiology Education - Anytime and Anyplace.
Proceedings of the 2000 IEEE International Conference on Multimedia and Expo, 2000
1999
ASSERT: A Physician-in-the-Loop Content-Based Retrieval System for HRCT Image Databases.
Comput. Vis. Image Underst., 1999
Proceedings of the Storage and Retrieval for Image and Video Databases VII, 1999
Proceedings of the Storage and Retrieval for Image and Video Databases VII, 1999
Proceedings of the 1999 Conference on Computer Vision and Pattern Recognition (CVPR '99), 1999
Content-Based Retrieval from Medical Image Databases: A Synergy of Human Interaction, Machine Learning and Computer Vision.
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999