Chi-Ren Shyu

Orcid: 0000-0001-9197-9522

According to our database1, Chi-Ren Shyu authored at least 124 papers between 1999 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2024
Identifying gene expression programs in single-cell RNA-seq data using linear correlation explanation.
J. Biomed. Informatics, 2024

2023
Self-sovereign identity empowered non-fungible patient tokenization for health information exchange using blockchain technology.
Comput. Biol. Medicine, May, 2023

Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov.
J. Biomed. Informatics, March, 2023

Automated Detection of Poultry Farms from Aerial Images for Actionable AI System toward Biosecurity Applications.
Proceedings of the 52nd IEEE Applied Imagery Pattern Recognition Workshop, 2023

2022
RHPTree - Risk Hierarchical Pattern Tree for Scalable Long Pattern Mining.
ACM Trans. Knowl. Discov. Data, 2022

Thoughts on Non-IID Data Impact in Healthcare with Federated Learning Medical Blockchain.
Proceedings of the 4th IEEE International Conference on Cognitive Machine Intelligence, 2022

Found in Translation: Transforming Rules-Based Diabetes Phenotyping Algorithms into Reproducible Diabetes Cohorts from Real-World Data.
Proceedings of the AMIA 2022, 2022

2021
Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential.
J. Biomed. Informatics, 2021

2020
A Patient-Centric Health Information Exchange Framework Using Blockchain Technology.
IEEE J. Biomed. Health Informatics, 2020

Exploratory Data Mining for Subgroup Cohort Discoveries and Prioritization.
IEEE J. Biomed. Health Informatics, 2020

Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations.
Quant. Biol., 2020

Development of A Blockchain Framework for Virtual Clinical Trials.
Proceedings of the AMIA 2020, 2020

A Deep Exploratory Mining Approach for Discovering Associations between Family History of Type 1 Diabetes and Autoimmune and Related Conditions.
Proceedings of the AMIA 2020, 2020

Using novel exploratory subgroup mining to determine complication patterns of post colectomy based on hospital characteristics.
Proceedings of the AMIA 2020, 2020

Differentiating Genetic Risk Factors Between Triple Negative and Luminal Breast Cancer Subtypes Using Long Contrast Patterns Mining.
Proceedings of the AMIA 2020, 2020

Drug Repositioning for Colorectal Cancer Patient Subgroups Using Exploratory Mining and Network Analysis.
Proceedings of the AMIA 2020, 2020

2019
Advancing health equity and access using telemedicine: a geospatial assessment.
J. Am. Medical Informatics Assoc., 2019

Medical calculators: Prevalence, and barriers to use.
Comput. Methods Programs Biomed., 2019

Modeling of Contextual Information in Knowledge Graphs of Diagnostic Reports.
Proceedings of the Second International Workshop on Semantic Web Meets Health Data Management (SWH 2019) co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Developing a Taxonomy of Online Medical Calculators for Assessing Automatability and Clinical Efficiency Improvements.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Quantifying and understanding the differences in visual activities with contrast subsequences.
Proceedings of the 11th ACM Symposium on Eye Tracking Research & Applications, 2019

Applying Blockchain Technology to Enhance Clinical Trial Recruitment.
Proceedings of the AMIA 2019, 2019

2018
Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups.
J. Biomed. Informatics, 2018

Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials.
Proceedings of the AMIA 2018, 2018

Leveraging Location to Integrate and Access Information for Analyzing Health Context.
Proceedings of the AMIA 2018, 2018

2017
Combining Contrast Mining with Logistic Regression To Predict Healthcare Utilization in a Managed Care Population.
Appl. Clin. Inform., 2017

Contrast Mining for Pattern Discovery and Descriptive Analytics to Tailor Sub-Groups of Patients Using Big Data Solutions.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

In-Memory Distributed Indexing for Large-Scale Media Data Retrieval.
Proceedings of the 19th IEEE International Symposium on Multimedia, 2017

Quasi-palindrome effects on DNA sequence evolution.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Discovering multifactorial associations with the development of age-related cataract using contrast mining.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Geospatial health context table.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Efficient GPU-accelerated extraction of imperfect inverted repeats from DNA sequences.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Detection of Simulated Vocal Dysfunctions Using Complex sEMG Patterns.
IEEE J. Biomed. Health Informatics, 2016

Visual Reasoning Indexing and Retrieval Using In-Memory Computing.
Int. J. Semantic Comput., 2016

Mining large-scale repetitive sequences in a MapReduce setting.
Int. J. Data Min. Bioinform., 2016

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.
Database J. Biol. Databases Curation, 2016

Cartesian Operations on Distributed Datasets Using Virtual Partitioning.
Proceedings of the Second IEEE International Conference on Big Data Computing Service and Applications, 2016

Semi-hypothesis guided exploratory analysis for biomedical applications.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Large scale extraction of perfect and imperfect DNA palindromes using in-memory computing.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Contrasting Autism Subgroup Genotypes Using Frequent Pattern Mining.
Proceedings of the AMIA 2016, 2016

Automatic Workflow Extraction Using Sequential Pattern Mining and Electronic Medical Record Usage Data.
Proceedings of the AMIA 2016, 2016

RDF-Based Method to Uncover Implicit Health Communication Episodes from Unstructured Healthcare Data.
Proceedings of the AMIA 2016, 2016

2015
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction.
BMC Medical Informatics Decis. Mak., 2015

Genetic algorithm supported by graphical processing unit improves the exploration of effective connectivity in functional brain imaging.
Frontiers Comput. Neurosci., 2015

Large scale multi-species palindrome study using distributed in-memory computing.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Data Mining to Predict Healthcare Utilization in Managed Care Patients.
Proceedings of the AMIA 2015, 2015

Integrated Clinical Decision Support Systems: Systematic Review and Classification of Online Medical Calculators.
Proceedings of the AMIA 2015, 2015

2014
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning.
PLoS Comput. Biol., 2014

Uncovering influence links in molecular knowledge networks to streamline personalized medicine.
J. Biomed. Informatics, 2014

Non-invasive ambulatory monitoring of complex sEMG patterns and its potential application in the detection of vocal dysfunctions.
Proceedings of the 16th IEEE International Conference on e-Health Networking, 2014

MRSMRS: Mining repetitive sequences in a MapReduce setting.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Applications of PathFinder Network Scaling for Improving the Ranking of Satellite Images.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2013

Fast GPU Algorithm for Analyzing Effective Connectivity in Functional Brain Imaging.
Proceedings of the 3rd IFAC International Conference on Intelligent Control and Automation Science, 2013

Comparing limb-volume measurement techniques: 3D models from an infrared depth sensor versus water displacement.
Proceedings of the IEEE 15th International Conference on e-Health Networking, 2013

TeleMDID: Mobile technology applications for interactive diagnoses in teledermatology clinics.
Proceedings of the IEEE 15th International Conference on e-Health Networking, 2013

A system for limb-volume measurement using 3D models from an infrared depth sensor.
Proceedings of the 2013 IEEE Symposium on Computational Intelligence in Healthcare and e-health, 2013

Mining repetitive sequences using a big data ecosystem.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

PBSalign: Sequence-independent local alignment of protein binding sites.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Object behavior mining from mitochondiral shape databases for degenerated nerve disease studies.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Multi-Index Multi-Object Content-Based Retrieval.
IEEE Trans. Geosci. Remote. Sens., 2012

PBSword: a web server for searching similar protein-protein binding sites.
Nucleic Acids Res., 2012

DOMMINO: a database of macromolecular interactions.
Nucleic Acids Res., 2012

Role of domain knowledge in developing user-centered medical-image indexing.
J. Assoc. Inf. Sci. Technol., 2012

Fast protein binding site comparisons using visual words representation.
Bioinform., 2012

Associative semantic ranking of satellite images using PathFinder Network Scaling ensemble methods.
Proceedings of the 2012 IEEE International Geoscience and Remote Sensing Symposium, 2012

Improving disease management through a mobile application for lymphedema patients.
Proceedings of the IEEE 14th International Conference on e-Health Networking, 2012

Quantifying the quality of imaging interpretations.
Proceedings of the AMIA 2012, 2012

A Study of Dermatological Image Search, Archive, and Use Behaviors.
Proceedings of the AMIA 2012, 2012

2011
Entropy-Balanced Bitmap Tree for Shape-Based Object Retrieval From Large-Scale Satellite Imagery Databases.
IEEE Trans. Geosci. Remote. Sens., 2011

A SNOMED supported ontological vector model for subclinical disorder detection using EHR similarity.
Eng. Appl. Artif. Intell., 2011

Computable visually observed phenotype ontological framework for plants.
BMC Bioinform., 2011

Multi-source and ontology-based retrieval engine for maize mutant phenotypes.
Database J. Biol. Databases Curation, 2011

Medical image describing behavior: a comparison between an expert and novice.
Proceedings of the iConference 2011, 2011

Search tactics for medical image retrieval.
Proceedings of the Bridging the Gulf: Communication and Information in Society, Technology, and Work, 2011

2010
ProteinDBS v2.0: a web server for global and local protein structure search.
Nucleic Acids Res., 2010

Visual-Semantic Modeling in Content-Based Geospatial Information Retrieval Using Associative Mining Techniques.
IEEE Geosci. Remote. Sens. Lett., 2010

Progressive spatial clustering of content-based satellite imagery retrieval results.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2010

Visual information mining and ranking using graded relevance assessments in satellite image databases.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2010

An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Multi-resolution tile-based follicle detection using color and textural information of follicular lymphoma IHC slides.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery.
J. Biomed. Informatics, 2009

Editorial for the special issue of knowledge discovery and management in biomedical information systems.
Inf. Syst. Frontiers, 2009

Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.
Bioinform., 2009

2008
The effects of conceptual description and search practice on users' mental models and information seeking in a case-based reasoning retrieval system.
Inf. Process. Manag., 2008

GeoCDX: An Automated Change Detection & Exploitation System for High Resolution Satelite Imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2008

Ontology Driven Content Mining and Semantic Queries for Satellite Image Databases.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2008

2007
Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval.
IEEE Trans. Inf. Technol. Biomed., 2007

GeoIRIS: Geospatial Information Retrieval and Indexing System - Content Mining, Semantics Modeling, and Complex Queries.
IEEE Trans. Geosci. Remote. Sens., 2007

Image Analysis for Mapping Immeasurable Phenotypes in Maize [Life Sciences].
IEEE Signal Process. Mag., 2007

Searching and Mining Visually Observed Phenotypes of maize Mutants.
J. Bioinform. Comput. Biol., 2007

User-specific semantics for modeling content-based geospatial knowledge.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2007

2006
A fast SCOP fold classification system using content-based E-Predict algorithm.
BMC Bioinform., 2006

Knowledge Discovery by Mining Association Rules and Temporal-Spatial Information from Large-Scale Geospatial Image Databases.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006

A Framework for Geospatial Satellite Imagery Retrieval Systems.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006

Mining Visual Associations from User Feedback for Weighting Multiple Indexes in Geospatial Image Retrieval.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006

Fusion of Spectral and Spatial Information for Automated Change Detection in High Resolution Satellite Imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2006

Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

Predicting Cancer Interaction Networks Using Text-Mining and Structure Understanding.
Proceedings of the AMIA 2006, 2006

Applying Sequential Forward Floating Selection to Protein Structure Prediction with a Study of HIV-1 RP.
Proceedings of the AMIA 2006, 2006

Knowledge Discovery using Domain-Concept Mining Approach for the Behavioral Risk Factor Surveillance System (BRFSS) Data.
Proceedings of the AMIA 2006, 2006

Representing Clinical Questions by Semantic Type for Better Classification.
Proceedings of the AMIA 2006, 2006

2005
Knowledge representation and sharing using visual semantic modeling for diagnostic medical image databases.
IEEE Trans. Inf. Technol. Biomed., 2005

A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index.
Int. J. Softw. Eng. Knowl. Eng., 2005

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
BMC Bioinform., 2005

Mining image content associations for visual semantic modeling in geospatial information indexing and retrieval.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Automated object extraction through simplification of the differential morphological profile for high-resolution satellite imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Modeling Multi-object Spatial Relationships for Satellite Image Database Indexing and Retrieval.
Proceedings of the Image and Video Retrieval, 4th International Conference, 2005

2004
ProteinDBS: a real-time retrieval system for protein structure comparison.
Nucleic Acids Res., 2004

ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval.
Nucleic Acids Res., 2004

Semantic Integration and Knowledge Exchange for Diagnostic Medical Image Databases.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Whither Biological Database Research?
OMICS, 2003

Semantics modeling in diagnostic medical image databases using customized fuzzy membership functions.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003

EBS k-d Tree: An Entropy Balanced Statistical k-d Tree for Image Databases with Ground-Truth Labels.
Proceedings of the Image and Video Retrieval, Second International Conference, 2003

2002
Using Human Perceptual Categories for Content-Based Retrieval from a Medical Image Database.
Comput. Vis. Image Underst., 2002

RFLPRetriever: a content-based retrieval system for biological image databases.
Proceedings of the Storage and Retrieval for Media Databases 2002, 2002

A Hybrid Tree Approach for Efficient Image Database Retrieval with Dynamic Feedback.
Proceedings of the 16th International Conference on Pattern Recognition, 2002

2001
Spatial Lesion Indexing for Medical Image Databases Using Force Histograms.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001

2000
A Web-Based CBIR-Assisted Learning Tool for Radiology Education - Anytime and Anyplace.
Proceedings of the 2000 IEEE International Conference on Multimedia and Expo, 2000

1999
ASSERT: A Physician-in-the-Loop Content-Based Retrieval System for HRCT Image Databases.
Comput. Vis. Image Underst., 1999

Archiving and retrieval of sequential images from tomographic databases in PACS.
Proceedings of the Storage and Retrieval for Image and Video Databases VII, 1999

Customized-queries approach to CBIR.
Proceedings of the Storage and Retrieval for Image and Video Databases VII, 1999

The Customized-Queries Approach to CBIR Using EM.
Proceedings of the 1999 Conference on Computer Vision and Pattern Recognition (CVPR '99), 1999

Content-Based Retrieval from Medical Image Databases: A Synergy of Human Interaction, Machine Learning and Computer Vision.
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999


  Loading...