Chen Lin

According to our database, Chen Lin authored at least 23 papers between 2012 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

2020

Does BERT need domain adaptation for clinical negation detection?

Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller

J. Am. Medical Informatics Assoc., 2020

Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources.

Alon Geva, Steven H. Abman, Shannon F. Manzi, Dunbar D. Ivy, Mary Mullen, John Griffin, Chen Lin, Guergana K. Savova, Kenneth D. Mandl

J. Am. Medical Informatics Assoc., 2020

A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova

Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020

Defining and Learning Refined Temporal Relations in the Clinical Narrative.

Kristin Wright-Bettner, Chen Lin, Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova

Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020

Extracting Relations between Radiotherapy Treatment Details.

Danielle S. Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond H. Mak, Guergana Savova

Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020

2018

ADEPT: An End-to-End System for High-Throughput Pharmacovigilance.

Alon Geva, Jason P. Stedman, Guergana Savova, Chen Lin, Shannon F. Manzi, Paul Avillach, Kenneth D. Mandl

Proceedings of the AMIA 2018, 2018

Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova

Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018

2017

Towards generalizable entity-centric clinical coreference resolution.

Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova

J. Biomed. Informatics, 2017

Neural Temporal Relation Extraction.

Dmitriy Dligach, Timothy A. Miller, Chen Lin, Steven Bethard, Guergana Savova

Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records.

Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson

Proceedings of the AMIA 2017, 2017

2016

Multilayered temporal modeling for the clinical domain.

Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2016

Improving Temporal Relation Extraction with Training Instance Augmentation.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Feature Portability in Cross-domain Clinical Coreference.

Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova

Proceedings of the AMIA 2016, 2016

2015

Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.

Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2015

Extracting Time Expressions from Clinical Text.

Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

2014

Temporal Annotation in the Clinical Domain.

William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy A. Miller, Chen Lin, Guergana K. Savova, James Pustejovsky

Trans. Assoc. Comput. Linguistics, 2014

Descending-Path Convolution Kernel for Syntactic Structures.

Chen Lin, Timothy A. Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova

Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics, 2014

2013

Discovering Temporal Narrative Containers in Clinical Text.

Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Discovering Time Expressions in Clinical Text.

Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova

Proceedings of the AMIA 2013, 2013

Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records.

Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova

Proceedings of the AMIA 2013, 2013

2012

A system for coreference resolution for the clinical narrative.

Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2012