Charlotte Soneson

According to our database, Charlotte Soneson authored at least 17 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

CoRR, 2024

2023

einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data.

Charlotte Soneson, Vytautas Iesmantavicius, Daniel Hess, Michael B. Stadler, Jan Seebacher

J. Open Source Softw., October, 2023

2022

monaLisa: an R/Bioconductor package for identifying regulatory motifs.

Dania Machlab, Lukas Burger, Charlotte Soneson, Filippo M. Rijli, Dirk Schübeler, Michael B. Stadler

Bioinform., 2022

2021

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data.

Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B. Stadler

PLoS Comput. Biol., 2021

2020

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori A. Shepherd, Martin Morgan, Rob Patro

PLoS Comput. Biol., 2020

TreeSummarizedExperiment: a S4 class for data with hierarchical structure.

Ruizhu Huang, Charlotte Soneson, Felix G. M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson

F1000Research, 2020

2019

HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats.

Lukas M. Weber, Charlotte Soneson

F1000Research, 2019

2018

iSEE: Interactive SummarizedExperiment Explorer.

Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun

F1000Research, 2018

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification.

Michael I. Love, Charlotte Soneson, Rob Patro

F1000Research, 2018

A systematic performance evaluation of clustering methods for single-cell RNA-seq data.

Angelo Duò, Mark D. Robinson, Charlotte Soneson

F1000Research, 2018

Towards unified quality verification of synthetic count data with countsimQC.

Charlotte Soneson, Mark D. Robinson

Bioinform., 2018

2015

Low Bias Local Intrinsic Dimension Estimation from Expected Simplex Skewness.

Kerstin Johnsson, Charlotte Soneson, Magnus Fontes

IEEE Trans. Pattern Anal. Mach. Intell., 2015

2014

Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings.

Charlotte Soneson, Magnus Fontes

Comput. Stat. Data Anal., 2014

compcodeR - an R package for benchmarking differential expression methods for RNA-seq data.

Charlotte Soneson

Bioinform., 2014

2013

A comparison of methods for differential expression analysis of RNA-seq data.

Charlotte Soneson, Mauro Delorenzi

BMC Bioinform., 2013

2011

The projection score - an evaluation criterion for variable subset selection in PCA visualization.

Magnus Fontes, Charlotte Soneson

BMC Bioinform., 2011

2010

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis.

Charlotte Soneson, Henrik Lilljebjörn, Thoas Fioretos, Magnus Fontes

BMC Bioinform., 2010