Charles Semple

Orcid: 0000-0002-4315-4195

Affiliations:
  • University of Canterbury, Christchurch, New Zealand


According to our database1, Charles Semple authored at least 84 papers between 1996 and 2024.

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Bibliography

2024
Orienting undirected phylogenetic networks.
J. Comput. Syst. Sci., March, 2024

Hypercubes and Hamilton cycles of display sets of rooted phylogenetic networks.
Adv. Appl. Math., January, 2024

The excluded minors for the intersection of bicircular and lattice path matroids.
Eur. J. Comb., 2024

Phylogenetic Trees Defined by at Most Three Characters.
Electron. J. Comb., 2024

2023
Excluded minors are almost fragile II: Essential elements.
J. Comb. Theory B, November, 2023

The excluded minors for 2- and 3-regular matroids.
J. Comb. Theory B, November, 2023

Cyclic Matroids.
SIAM J. Discret. Math., June, 2023

A Splitter Theorem for Elastic Elements in 3-Connected Matroids.
Electron. J. Comb., 2023

2022
On the complexity of optimising variants of phylogenetic diversity on phylogenetic networks.
Theor. Comput. Sci., 2022

On the Maximum Agreement Subtree Conjecture for Balanced Trees.
SIAM J. Discret. Math., 2022

Non-essential arcs in phylogenetic networks.
J. Comput. Syst. Sci., 2022

Hypercubes and Hamiltonian Cycles of Display Sets of Rooted Phylogenetic Networks.
CoRR, 2022

2021
Elastic Elements in 3-Connected Matroids.
Electron. J. Comb., 2021

Display Sets of Normal and Tree-Child Networks.
Electron. J. Comb., 2021

2020
Placing quantified variants of 3-SAT and Not-All-Equal 3-SAT in the polynomial hierarchy.
Theor. Comput. Sci., 2020

The Unbreakable Frame Matroids.
SIAM J. Discret. Math., 2020

Excluded minors are almost fragile.
J. Comb. Theory, Ser. B, 2020

Caterpillars on three and four leaves are sufficient to reconstruct normal networks.
CoRR, 2020

2019
Displaying trees across two phylogenetic networks.
Theor. Comput. Sci., 2019

Matroids with a cyclic arrangement of circuits and cocircuits.
Eur. J. Comb., 2019

Rooting for phylogenetic networks.
CoRR, 2019

A Splitter Theorem for 3-Connected 2-Polymatroids.
Electron. J. Comb., 2019

Matroids with many small circuits and cocircuits.
Adv. Appl. Math., 2019

Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies.
Adv. Appl. Math., 2019

2018
A universal tree-based network with the minimum number of reticulations.
Discret. Appl. Math., 2018

Constructing Tree-Child Networks from Distance Matrices.
Algorithmica, 2018

New characterisations of tree-based networks and proximity measures.
Adv. Appl. Math., 2018

2017
Size of a phylogenetic network.
Discret. Appl. Math., 2017

Recovering tree-child networks from shortest inter-taxa distance information.
CoRR, 2017

Quarnet inference rules for level-1 networks.
CoRR, 2017

Nonbinary tree-based networks: characterisations, metrics, and support trees.
CoRR, 2017

2016
A Wheels-and-Whirls Theorem for 3-Connected 2-Polymatroids.
SIAM J. Discret. Math., 2016

Determining a Binary Matroid from its Small Circuits.
Electron. J. Comb., 2016

Reticulation-visible networks.
Adv. Appl. Math., 2016

2015
Defining a Phylogenetic Tree with the Minimum Number of r-State Characters.
SIAM J. Discret. Math., 2015

2014
Representing Partitions on Trees.
SIAM J. Discret. Math., 2014

2013
Optimizing tree and character compatibility across several phylogenetic trees.
Theor. Comput. Sci., 2013

Counting Trees in a Phylogenetic Network Is \#P-Complete.
SIAM J. Comput., 2013

On the complexity of computing the temporal hybridization number for two phylogenies.
Discret. Appl. Math., 2013

Constructing a 3-tree for a 3-connected matroid.
Adv. Appl. Math., 2013

Special issue in honor of Geoff Whittle.
Adv. Appl. Math., 2013

On properties of almost all matroids.
Adv. Appl. Math., 2013

2012
An upgraded Wheels-and-Whirls Theorem for 3-connected matroids.
J. Comb. Theory B, 2012

Bounding the maximum size of a minimal definitive set of quartets.
Inf. Process. Lett., 2012

2011
Quantifying Hybridization in Realistic Time.
J. Comput. Biol., 2011

Exposing 3-separations in 3-connected matroids.
Adv. Appl. Math., 2011

2010
Locating a tree in a phylogenetic network.
Inf. Process. Lett., 2010

2009
Hybridization in Nonbinary Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Note on the hybridization number and subtree distance in phylogenetics.
Appl. Math. Lett., 2009

Optimizing phylogenetic diversity across two trees.
Appl. Math. Lett., 2009

Characterizing weak compatibility in terms of weighted quartets.
Adv. Appl. Math., 2009

2008
Nature Reserve Selection Problem: A Tight Approximation Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2008

A 3-approximation algorithm for the subtree distance between phylogenies.
J. Discrete Algorithms, 2008

A chain theorem for matroids.
J. Comb. Theory B, 2008

Wild triangles in 3-connected matroids.
J. Comb. Theory B, 2008

Negative Correlation in Graphs and Matroids.
Comb. Probab. Comput., 2008

Quartet Compatibility and the Quartet Graph.
Electron. J. Comb., 2008

Maintaining 3-connectivity relative to a fixed basis.
Adv. Appl. Math., 2008

2007
Computing the Hybridization Number of Two Phylogenetic Trees Is Fixed-Parameter Tractable.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

The structure of the 3-separations of 3-connected matroids II.
Eur. J. Comb., 2007

The structure of 3-connected matroids of path width three.
Eur. J. Comb., 2007

Computing the minimum number of hybridization events for a consistent evolutionary history.
Discret. Appl. Math., 2007

2006
Unicyclic Networks: Compatibility and Enumeration.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

Identifying X-Trees with Few Characters.
Electron. J. Comb., 2006

2005
A Class of General Supertree Methods for Nested Taxa.
SIAM J. Discret. Math., 2005

Identifying phylogenetic trees.
Discret. Math., 2005

Recovering a phylogenetic tree using pairwise closure operations.
Appl. Math. Lett., 2005

The structure of equivalent 3-separations in a 3-connected matroid.
Adv. Appl. Math., 2005

2004
The structure of the 3-separations of 3-connected matroids.
J. Comb. Theory B, 2004

Replacing cliques by stars in quasi-median graphs.
Discret. Appl. Math., 2004

Supertree algorithms for ancestral divergence dates and nested taxa.
Bioinform., 2004

Cyclic permutations and evolutionary trees.
Adv. Appl. Math., 2004

Fork-decompositions of matroids.
Adv. Appl. Math., 2004

Counting consistent phylogenetic trees is #P-complete.
Adv. Appl. Math., 2004

2003
Reconstructing Minimal Rooted Trees.
Discret. Appl. Math., 2003

2002
On Matroids of Branch-Width Three.
J. Comb. Theory B, 2002

A characterization for a set of partial partitions to define an <i>X</i>-tree.
Discret. Math., 2002

Infinite antichains of matroids with characteristic set {<i>p</i>}.
Discret. Math., 2002

Tree Reconstruction from Multi-State Characters.
Adv. Appl. Math., 2002

2000
Generalized Delta?-Y Exchange and <i>k</i>-Regular Matroids.
J. Comb. Theory B, 2000

A supertree method for rooted trees.
Discret. Appl. Math., 2000

Tree Reconstruction via a Closure Operation on Partial Splits.
Proceedings of the Computational Biology, 2000

1999
On Maximum-sized k-Regular Matroids.
Graphs Comb., 1999

1996
k-Regular Matroids.
Proceedings of the First Conference of the Centre for Discrete Mathematics and Theoretical Computer Science, 1996


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