Charles Ofria

J. Open Source Softw., 2024

Case Study of Novelty, Complexity, and Adaptation in a Multicellular System.

[BibT_eX]

[DOI]

Santiago Rodriguez Papa

CoRR, 2024

Improving Lexicase Selection with Informed Down-Sampling.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2024

2023

Matchmaker, matchmaker, make me a match: geometric, variational, and evolutionary implications of criteria for tag affinity.

[BibT_eX]

[DOI]

Genet. Program. Evolvable Mach., June, 2023

Informed Down-Sampled Lexicase Selection: Identifying productive training cases for efficient problem solving.

[BibT_eX]

[DOI]

CoRR, 2023

Tag Affinity Criteria Influence Adaptive Evolution.

[BibT_eX]

[DOI]

Proceedings of the Companion Proceedings of the Conference on Genetic and Evolutionary Computation, 2023

2022

hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations.

[BibT_eX]

[DOI]

J. Open Source Softw., December, 2022

Best-Effort Communication Improves Performance and Scales Robustly on Conventional Hardware.

[BibT_eX]

[DOI]

CoRR, 2022

A suite of diagnostic metrics for characterizing selection schemes.

[BibT_eX]

[DOI]

CoRR, 2022

Using the Comparative Hybrid Approach to Disentangle the Role of Substrate Choice on the Evolution of Cognition.

[BibT_eX]

[DOI]

Artif. Life, 2022

Hereditary stratigraphy: genome annotations to enable phylogenetic inference over distributed populations.

[BibT_eX]

[DOI]

Proceedings of the GECCO '22: Genetic and Evolutionary Computation Conference, Companion Volume, Boston, Massachusetts, USA, July 9, 2022

Tag-based module regulation for genetic programming.

[BibT_eX]

[DOI]

Proceedings of the GECCO '22: Genetic and Evolutionary Computation Conference, Companion Volume, Boston, Massachusetts, USA, July 9, 2022

Measuring the ability of lexicase selection to find obscure pathways to optimality.

[BibT_eX]

[DOI]

Proceedings of the GECCO '22: Genetic and Evolutionary Computation Conference, Companion Volume, Boston, Massachusetts, USA, July 9, 2022

2021

Tag-based regulation of modules in genetic programming improves context-dependent problem solving.

[BibT_eX]

[DOI]

Genet. Program. Evolvable Mach., 2021

SignalGP-Lite: Event Driven Genetic Programming Library for Large-Scale Artificial Life Applications.

[BibT_eX]

[DOI]

Santiago Rodriguez Papa

CoRR, 2021

Exploring Evolved Multicellular Life Histories in a Open-Ended Digital Evolution System.

[BibT_eX]

[DOI]

CoRR, 2021

The Comparative Hybrid Approach to Investigate Cognition across Substrates.

[BibT_eX]

[DOI]

Proceedings of the 2021 Conference on Artificial Life, 2021

An Exploration of Exploration: Measuring the Ability of Lexicase Selection to Find Obscure Pathways to Optimality.

[BibT_eX]

[DOI]

Proceedings of the Genetic Programming Theory and Practice XVIII [GPTP 2021]., 2021

Conduit: a C++ library for best-effort high performance computing.

[BibT_eX]

[DOI]

Santiago Rodriguez Papa

Proceedings of the GECCO '21: Genetic and Evolutionary Computation Conference, 2021

2020

Tag-based Genetic Regulation for Genetic Programming.

[BibT_eX]

[DOI]

CoRR, 2020

The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities.

[BibT_eX]

[DOI]

Artif. Life, 2020

Interpreting the Tape of Life: Ancestry-Based Analyses Provide Insights and Intuition about Evolutionary Dynamics.

[BibT_eX]

[DOI]

Artif. Life, 2020

Rank epistasis: A new model for analyzing epistatic interactions in the absence of quantifiable fitness interactions.

[BibT_eX]

[DOI]

Proceedings of the 2020 Conference on Artificial Life, 2020

2019

Fluctuating environments select for short-term phenotypic variation leading to long-term exploration.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Toward Open-Ended Fraternal Transitions in Individuality.

[BibT_eX]

[DOI]

Artif. Life, 2019

The MODES Toolbox: Measurements of Open-Ended Dynamics in Evolving Systems.

[BibT_eX]

[DOI]

Artif. Life, 2019

Horizontal Gene Transfer Leads to Increased Task Acquisition and Genomic Modularity in Digital Organisms.

[BibT_eX]

[DOI]

Penelope Faulkner Rainford

Proceedings of the 2019 Conference on Artificial Life, 2019

Data Standards for Artificial Life Software.

[BibT_eX]

[DOI]

Paul Richmond

Proceedings of the 2019 Conference on Artificial Life, 2019

On Sexual Selection in the Presence of Multiple Costly Displays.

[BibT_eX]

[DOI]

Proceedings of the 2019 Conference on Artificial Life, 2019

Characterizing the Effects of Random Subsampling on Lexicase Selection.

[BibT_eX]

[DOI]

Austin J. Ferguson

Proceedings of the Genetic Programming Theory and Practice XVII [GPTP 2019, 2019

Tag-accessed memory for genetic programming.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

Random subsampling improves performance in lexicase selection.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

MABE 2.0: an introduction to MABE and a road map for the future of MABE development.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

2018

What else is in an evolved name? Exploring evolvable specificity with SignalGP.

[BibT_eX]

[DOI]

PeerJ Prepr., 2018

Evolving reactive agents with SignalGP.

[BibT_eX]

[DOI]

PeerJ Prepr., 2018

Exploring genetic programming systems with MAP-Elites.

[BibT_eX]

[DOI]

PeerJ Prepr., 2018

Quantifying the tape of life: Ancestry-based metrics provide insights and intuition about evolutionary dynamics.

[BibT_eX]

[DOI]

PeerJ Prepr., 2018

Ecological theory provides insights about evolutionary computation.

[BibT_eX]

[DOI]

Wolfgang Banzhaf

PeerJ Prepr., 2018

Spatial Structure Can Decrease Symbiotic Cooperation.

[BibT_eX]

[DOI]

Anya E. Vostinar

Artif. Life, 2018

Signals in the Dark: What factors select for the evolution of cooperation controlled by quorum sensing?

[BibT_eX]

[DOI]

Proceedings of the 2018 Conference on Artificial Life, 2018

Synthesizing Research on the Generation and Maintenance of Population Diversity.

[BibT_eX]

[DOI]

Proceedings of the 2018 Conference on Artificial Life, 2018

Digital investigations on the evolution of prokaryote photosynthesis regulation: late-breaking abstract.

[BibT_eX]

[DOI]

Anselmo C. Pontes

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

Learning an evolvable genotype-phenotype mapping.

[BibT_eX]

[DOI]

Wolfgang Banzhaf

Proceedings of the Genetic and Evolutionary Computation Conference, 2018

Evolving event-driven programs with SignalGP.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2018

Visualizing the tape of life: exploring evolutionary history with virtual reality.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

Ecological theory provides insights about evolutionary computation.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

2017

The genotype-phenotype map of an evolving digital organism.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2017

Applying Ecological Principles to Genetic Programming.

[BibT_eX]

[DOI]

Wolfgang Banzhaf

Proceedings of the Genetic Programming Theory and Practice XV, 2017

Threshold for cooperation on irregular spatial networks.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Investigations into the evolutionary origin of navigation and learning.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Improved adaptation in exogenously and endogenously changing environments.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Gene duplications drive the evolution of complex traits and regulation.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Spatial resource heterogeneity creates local hotspots of evolutionary potential.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth European Conference Artificial Life, 2017

Sexual selection promotes ecological speciation in digital organisms.

[BibT_eX]

[DOI]

Jason Keagy

Proceedings of the Fourteenth European Conference Artificial Life, 2017

2016

Open-Ended Evolution: Perspectives from the OEE Workshop in York.

[BibT_eX]

[DOI]

Artif. Life, 2016

WebAL Comes of Age: A Review of the First 21 Years of Artificial Life on the Web.

[BibT_eX]

[DOI]

Simon J. Hickinbotham

Artif. Life, 2016

What Factors Drive the Evolution of Mutualism?

[BibT_eX]

[DOI]

Anya E. Vostinar

Luis Zaman

Proceedings of the Genetic and Evolutionary Computation Conference, 2016

The Effects of Evolution and Spatial Structure on Diversity in Biological Reserves.

[BibT_eX]

[DOI]

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

The Evolution of Evolvability: Changing Environments Promote Rapid Adaptation in Digital Organisms.

[BibT_eX]

[DOI]

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

The Evolutionary Origins of Phenotypic Plasticity.

[BibT_eX]

[DOI]

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

The Prisoners Dilemma, Memory, and the Early Evolution of Intelligence.

[BibT_eX]

[DOI]

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

2015

Unraveling the genotype-phenotype map of evolving digital organisms.

[BibT_eX]

[DOI]

Proceedings of the Thirteenth European Conference Artificial Life, 2015

2014

The evolution of kin inclusivity levels.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2014

There and back again: gene-processing hardware for the evolution and robotic deployment of robust navigation strategies.

[BibT_eX]

[DOI]

David M. Bryson

Aaron P. Wagner

Proceedings of the Genetic and Evolutionary Computation Conference, 2014

Causes vs Benefits in the Evolution of Prey Grouping.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth International Conference on the Simulation and Synthesis of Living Systems, 2014

2013

Distributed Cooperative Caching in Social Wireless Networks.

[BibT_eX]

[DOI]

Mahmoud Taghizadeh

Kristopher K. Micinski

Subir Biswas

Eric Torng

IEEE Trans. Mob. Comput., 2013

Evolving Digital Ecological Networks.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2013

Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures.

[BibT_eX]

[DOI]

David M. Bryson

CoRR, 2013

2012

Finger-painting Fitness Landscapes: An Interactive Tool for Exploring Complex Evolutionary Dynamics.

[BibT_eX]

[DOI]

Luis Zaman

Richard E. Lenski

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

Evolutionary Potential is Maximized at Intermediate Diversity Levels.

[BibT_eX]

[DOI]

Bess L. Walker

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

The Evolution of Temporal Polyethism.

[BibT_eX]

[DOI]

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

An ecology-based evolutionary algorithm to evolve solutions to complex problems.

[BibT_eX]

[DOI]

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

Digital Evolution Exhibits Surprising Robustness to Poor Design Decisions.

[BibT_eX]

[DOI]

David M. Bryson

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

2011

On the Performance of Indirect Encoding Across the Continuum of Regularity.

[BibT_eX]

[DOI]

IEEE Trans. Evol. Comput., 2011

Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms.

[BibT_eX]

[DOI]

Luis Zaman

Suhas Devangam

Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

Modeling the evolutionary dynamics of plasmids in spatial populations.

[BibT_eX]

[DOI]

Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

Digital sex: Causes and consequences.

[BibT_eX]

[DOI]

Dusan Misevic

Richard E. Lenski

Proceedings of the Advances in Artificial Life: 20th Anniversary Edition, 2011

Clever creatures: Case studies of evolved digital organisms.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life: 20th Anniversary Edition, 2011

Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life: 20th Anniversary Edition, 2011

2010

Evolution of division of labor in genetically homogenous groups.

[BibT_eX]

[DOI]

Heather Goldsby

David B. Knoester

Proceedings of the Genetic and Evolutionary Computation Conference, 2010

Investigating whether hyperNEAT produces modular neural networks.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2010

Digital evolution with avida.

[BibT_eX]

[DOI]

Benjamin E. Beckmann

Proceedings of the Genetic and Evolutionary Computation Conference, 2010

Early Evolution of Memory Usage in Digital Organisms.

[BibT_eX]

[DOI]

Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, 2010

Social Structure and the Maintenance of Biodiversity.

[BibT_eX]

[DOI]

Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, 2010

2009

Ecological approaches to diversity maintenance in evolutionary algorithms.

[BibT_eX]

[DOI]

Sherri Goings

Proceedings of the 2009 IEEE Symposium on Artificial Life, 2009

Cockroaches, drunkards, and climbers: Modeling the evolution of simple movement strategies using digital organisms.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE Symposium on Artificial Life, 2009

Applying digital evolution to the design of self-adaptive software.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE Symposium on Artificial Life, 2009

Problem decomposition using indirect reciprocity in evolved populations.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2009

The sensitivity of HyperNEAT to different geometric representations of a problem.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2009

The Evolution of Division of Labor.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life. Darwin Meets von Neumann, 2009

HybrID: A Hybridization of Indirect and Direct Encodings for Evolutionary Computation.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life. Darwin Meets von Neumann, 2009

Evolving coordinated quadruped gaits with the HyperNEAT generative encoding.

[BibT_eX]

[DOI]

Proceedings of the IEEE Congress on Evolutionary Computation, 2009

2008

Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2008

Harnessing Digital Evolution.

[BibT_eX]

[DOI]

Computer, 2008

On the Gradual Evolution of Complexity and the Sudden Emergence of Complex Features.

[BibT_eX]

[DOI]

Wei Huang

Eric Torng

Artif. Life, 2008

How a Generative Encoding Fares as Problem-Regularity Decreases.

[BibT_eX]

[DOI]

Proceedings of the Parallel Problem Solving from Nature, 2008

Digital Evolution of Behavioral Models for Autonomic Systems.

[BibT_eX]

[DOI]

Proceedings of the 2008 International Conference on Autonomic Computing, 2008

Autonomic Software Development Methodology Based on Darwinian Evolution.

[BibT_eX]

[DOI]

Proceedings of the 2008 International Conference on Autonomic Computing, 2008

Cooperative network construction using digital germlines.

[BibT_eX]

[DOI]

David B. Knoester

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

On the evolution of motility and intelligent tactic response.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

How generative encodings fare on less regular problems.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

Selection for group-level efficiency leads to self-regulation of population size.

[BibT_eX]

[DOI]

Benjamin E. Beckmann

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

2007

Evolution of Cooperative Information Gathering in Self-Replicating Digital Organisms.

[BibT_eX]

[DOI]

Proceedings of the First International Conference on Self-Adaptive and Self-Organizing Systems, 2007

Digitally Evolving Models for Dynamically Adaptive Systems.

[BibT_eX]

[DOI]

Proceedings of the 2007 ICSE Workshop on Software Engineering for Adaptive and Self-Managing Systems, 2007

Using group selection to evolve leadership in populations of self-replicating digital organisms.

[BibT_eX]

[DOI]

David B. Knoester

Proceedings of the Genetic and Evolutionary Computation Conference, 2007

Directed Evolution of Communication and Cooperation in Digital Organisms.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life, 9th European Conference, 2007

Investigating the Emergence of Phenotypic Plasticity in Evolving Digital Organisms.

[BibT_eX]

[DOI]

Proceedings of the Advances in Artificial Life, 9th European Conference, 2007

Evolution of an Adaptive Sleep Response in Digital Organisms.

[BibT_eX]

[DOI]

Benjamin E. Beckmann

Proceedings of the Advances in Artificial Life, 9th European Conference, 2007

2004

Avida: A Software Platform for Research in Computational Evolutionary Biology.

[BibT_eX]

[DOI]

Claus O. Wilke

Artif. Life, 2004

Using Avida to Test the Effects of Natural Selection on Phylogenetic Reconstruction Methods.

[BibT_eX]

[DOI]

Artif. Life, 2004

2003

Selective pressures on genomes in molecular evolution

[BibT_eX]

[DOI]

Travis C. Collier

CoRR, 2003

The Effect of Natural Selection on Phylogeny Reconstruction Algorithms.

[BibT_eX]

[DOI]

Proceedings of the Genetic and Evolutionary Computation, 2003

2002

Design of evolvable computer languages.

[BibT_eX]

[DOI]

Travis C. Collier

IEEE Trans. Evol. Comput., 2002

2000

Evolution of biological complexity.

[BibT_eX]

[DOI]

Travis C. Collier

Proc. Natl. Acad. Sci. USA, 2000

1999

Evolution of genetic organization in digital organisms

[BibT_eX]

[DOI]